Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,887,159 – 10,887,250 |
Length | 91 |
Max. P | 0.970577 |
Location | 10,887,159 – 10,887,250 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -38.83 |
Consensus MFE | -32.81 |
Energy contribution | -32.57 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.23 |
Mean z-score | -3.06 |
Structure conservation index | 0.84 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10887159 91 + 23771897 GCUUUUCCGACUGCCGAUUCCAAUCGGUCUGCGGCGGGUGCCGCGCUCCGUUUGGCAGCGCCAAA--AGAGCCAAGAAACGCGAUUGGAAUCG ..............((((((((((((.((((((((....)))))((((..((((((...))))))--.))))..)))....)))))))))))) ( -40.40) >DroVir_CAF1 8169 79 + 1 ------UCAUUCGCCGAUUCCAAUCG-UCUGC-GCGGCUGCUGCGCUCCGUUUGGCAGCGCCAGG--CGGGC----GCUUGCGAUUGGUAUCG ------........((((.(((((((-(..((-((.((....))...(((((((((...))))))--)))))----))..)))))))).)))) ( -40.50) >DroGri_CAF1 9342 79 + 1 ------UCAUUUGCCGAUUCCAAUCG-UCUGU-GCGGCUGCUGUGCUCCGUUUGGCAGCGCCAGG--CGGAC----GAUUGCGAUUGGAAUCA ------.........(((((((((((-(..(.-.(((...)))..)((((((((((...))))))--)))).----....)))))))))))). ( -37.50) >DroSec_CAF1 19407 90 + 1 GCUU-UCCGACUGCCGAUUCCAAUCGGUCUGCGGCGGGUGCCGCGCUCCGUUUGGCAGCGCCAAA--AGAGCCAAGAAACGCGAUUGGAAUCG ....-.........((((((((((((.((((((((....)))))((((..((((((...))))))--.))))..)))....)))))))))))) ( -40.40) >DroEre_CAF1 18411 90 + 1 GCUUU-UUGACUGCCGAUUCCAAUCGGUCUGCGGCGGGUGCCGCGCUCCGUUUGGCAGCGCCAAA--AGAGCCAAGAAACGCGAUUGGAAUCG .....-........((((((((((((.((((((((....)))))((((..((((((...))))))--.))))..)))....)))))))))))) ( -40.40) >DroAna_CAF1 8612 90 + 1 GCU---UUGACUGCUGAUUCCAAUCGGUCUGCGGCGGGUGUCGCGCUCCGUUUGGCAGCGCCAAAAAAAAGCCAACAAAUGCGAUUGGAAUCG ((.---......)).(((((((((((....(((((....)))))(((...((((((...))))))....))).........))))))))))). ( -33.80) >consensus GCU___UCGACUGCCGAUUCCAAUCGGUCUGCGGCGGGUGCCGCGCUCCGUUUGGCAGCGCCAAA__AGAGCCAAGAAACGCGAUUGGAAUCG ...............(((((((((((....(((((....)))))((((..((((((...))))))...)))).........))))))))))). (-32.81 = -32.57 + -0.25)
Location | 10,887,159 – 10,887,250 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -38.97 |
Consensus MFE | -30.97 |
Energy contribution | -32.75 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.11 |
Mean z-score | -3.64 |
Structure conservation index | 0.79 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10887159 91 - 23771897 CGAUUCCAAUCGCGUUUCUUGGCUCU--UUUGGCGCUGCCAAACGGAGCGCGGCACCCGCCGCAGACCGAUUGGAAUCGGCAGUCGGAAAAGC ((((((((((((.((((....(((((--((((((...)))))).)))))(((((....))))))))))))))))))))).............. ( -45.40) >DroVir_CAF1 8169 79 - 1 CGAUACCAAUCGCAAGC----GCCCG--CCUGGCGCUGCCAAACGGAGCGCAGCAGCCGC-GCAGA-CGAUUGGAAUCGGCGAAUGA------ ((((.((((((((..((----(((((--..((((...))))..))).)))).((......-)).).-))))))).))))........------ ( -34.30) >DroGri_CAF1 9342 79 - 1 UGAUUCCAAUCGCAAUC----GUCCG--CCUGGCGCUGCCAAACGGAGCACAGCAGCCGC-ACAGA-CGAUUGGAAUCGGCAAAUGA------ .((((((((((((....----.((((--..((((...))))..)))).....((....))-...).-))))))))))).........------ ( -28.80) >DroSec_CAF1 19407 90 - 1 CGAUUCCAAUCGCGUUUCUUGGCUCU--UUUGGCGCUGCCAAACGGAGCGCGGCACCCGCCGCAGACCGAUUGGAAUCGGCAGUCGGA-AAGC ((((((((((((.((((....(((((--((((((...)))))).)))))(((((....))))))))))))))))))))).........-.... ( -45.40) >DroEre_CAF1 18411 90 - 1 CGAUUCCAAUCGCGUUUCUUGGCUCU--UUUGGCGCUGCCAAACGGAGCGCGGCACCCGCCGCAGACCGAUUGGAAUCGGCAGUCAA-AAAGC ((((((((((((.((((....(((((--((((((...)))))).)))))(((((....)))))))))))))))))))))........-..... ( -45.40) >DroAna_CAF1 8612 90 - 1 CGAUUCCAAUCGCAUUUGUUGGCUUUUUUUUGGCGCUGCCAAACGGAGCGCGACACCCGCCGCAGACCGAUUGGAAUCAGCAGUCAA---AGC .(((((((((((..(((((.(((.......(.(((((.((....))))))).).....)))))))).))))))))))).........---... ( -34.50) >consensus CGAUUCCAAUCGCAUUUCUUGGCUCU__UUUGGCGCUGCCAAACGGAGCGCGGCACCCGCCGCAGACCGAUUGGAAUCGGCAGUCGA___AGC ((((((((((((.........((((...((((((...))))))..))))(((((....)))))....)))))))))))).............. (-30.97 = -32.75 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:04 2006