Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,093,255 – 1,093,364 |
Length | 109 |
Max. P | 0.617282 |
Location | 1,093,255 – 1,093,364 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.04 |
Mean single sequence MFE | -29.26 |
Consensus MFE | -21.66 |
Energy contribution | -21.26 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.11 |
Mean z-score | -1.65 |
Structure conservation index | 0.74 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1093255 109 - 23771897 GGCGCCCCAAGGGCAUCGAUUUCUGCUAAUCCAAGGGAAAAGAUCUUGAUGCGGAAAGCGCCUCAGUGAGAGC-----UAUGAUUAGGUUACCGACAA-AAGGAG-----UAAUGAAAAA (((((((...))))...(.(((((((.....(((((.......)))))..))))))).))))..(((....))-----)........((((((.....-...).)-----))))...... ( -26.90) >DroSec_CAF1 10661 110 - 1 GGCGCCCCAAGGGCAUCGAUUUCUGCUAAUCCAAGGGAAAAGAUCUUGAUGCGGAAAGCGCCUCAGUGAAAUC-----UAUGAUUAGGUUUCCGAAAAAAAGGAG-----UACUGAAAAA (((((((...))))...(.(((((((.....(((((.......)))))..))))))).))))((((((.((((-----((....))))))(((........))).-----)))))).... ( -33.70) >DroSim_CAF1 2590 110 - 1 GGCGCCCCAAGGGCAUCGAUUUCUGCUAAUCCAAGGGAAAAGAUCUUGAUGCGGAAAGCGCCUCAGUGAAAUC-----UAUGAUUAGGUUUCCGACAAAAAGGAG-----UACUGAAAAA (((((((...))))...(.(((((((.....(((((.......)))))..))))))).))))((((((.((((-----((....))))))(((........))).-----)))))).... ( -33.70) >DroEre_CAF1 4642 98 - 1 GGCGCCCCAAGGGCAUCGAUUUCUGCUAAUCCAAGAGAAAAGAUCUUGAUGCGAAAAGCGCCUC--------------AAUGAUUAGGUGUUCGACCAAAAG--------AAUCGAGAAU (((((((...))(((((((..(((.((........))...)))..))))))).....)))))..--------------..(((((.(((.....))).....--------)))))..... ( -25.10) >DroYak_CAF1 6274 120 - 1 GGCGCCCCAAGGGCAUCGAUUUCUGUUAAUCCCAGAGAAAAGAUCUUGAUGCGAAAAGCGCCUCAGUGAAAGCGCCCCAAUGAUUAGGUUUCCAACAAAAAGGACACAAAAAACGAGAAA (((((..((.(((((((..((((((.......))))))...)))......((.....))))))...))...)))))...........((.(((........))).))............. ( -26.90) >consensus GGCGCCCCAAGGGCAUCGAUUUCUGCUAAUCCAAGGGAAAAGAUCUUGAUGCGGAAAGCGCCUCAGUGAAAGC_____UAUGAUUAGGUUUCCGACAAAAAGGAG_____UAAUGAAAAA (((((((...))(((((((..(((.((........))...)))..))))))).....))))).......................................................... (-21.66 = -21.26 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:25 2006