Locus 3757

Sequence ID 3L_DroMel_CAF1
Location 10,879,314 – 10,879,407
Length 93
Max. P 0.761682
window5861

overview

Window 1

Location 10,879,314 – 10,879,407
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 71.12
Mean single sequence MFE -29.62
Consensus MFE -9.43
Energy contribution -9.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.32
SVM decision value 0.50
SVM RNA-class probability 0.761682
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10879314 93 + 23771897
ACCCCCU--CCCACAUAGGCAAAGCAGUUUGCGCUGUGUAGGGAGGGGCA-GGCGGUGGCUAUUGCUACCAAAAUUGAGGUGUUUGCCUCCUUUCG
..(((((--((((((((((((((....))))).)))))).))))))))..-...((((((....))))))......(((((....)))))...... ( -46.80)
>DroPse_CAF1 7573 77 + 1
CCCCACUCUCGGACAUAGGCAAAGCAGCA--------------AAGCCA-----AAGUAGUUUGGCUACCAAAAUUGAGGUGUUUGCCUCCUUUUG
..........(((....((((((......--------------.(((((-----((....)))))))(((........))).)))))))))..... ( -19.20)
>DroSec_CAF1 11648 79 + 1
CCCCCCU--CCCAAAUAGGCAAAGCAGU--------------GGGGGUG-GGGGGGUGGCUAUUGCUACCAAAAUUGAGGUGUUUGCCUCCUUUCG
(((((((--((((.....((...))..)--------------))))).)-))))((((((....))))))......(((((....)))))...... ( -38.10)
>DroSim_CAF1 7664 94 + 1
CCCCCCU--CCCACAUAGGCAAAGCAGUUUGCGCUGAGCAGGGAGGGUGAGGGGGGUGGGUAUUGCUACCAAAAUUGAGGUGUUUGCCUCCUUUCG
(((((((--(((...(..((..(((.......)))..))..)...)).))))))))..((((....))))......(((((....)))))...... ( -36.80)
>DroEre_CAF1 6792 71 + 1
CCCC-----CACACAUAGGCAAAGCAGUUUGCG--------------------GAGGGGCUAUGGCUACCAAAAUUGAGGUGUUUGCCUCCUUUCG
....-----.........(((((....)))))(--------------------(((((((...(((.(((........)))))).))).))))).. ( -17.60)
>DroPer_CAF1 7093 77 + 1
CCCCACUCUCGGACAUAGGCAAAGCAGCA--------------AAGCCA-----AAGUAGUUUGGCUACCAAAAUUGAGGUGUUUGCCUCCUUUUG
..........(((....((((((......--------------.(((((-----((....)))))))(((........))).)))))))))..... ( -19.20)
>consensus
CCCCCCU__CCCACAUAGGCAAAGCAGUU______________AGGGCA____GAGGGGCUAUGGCUACCAAAAUUGAGGUGUUUGCCUCCUUUCG
................(((((((((.......................................))((((........)))))))))))....... ( -9.43 =  -9.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:56 2006