Locus 3756

Sequence ID 3L_DroMel_CAF1
Location 10,874,076 – 10,874,172
Length 96
Max. P 0.807370
window5860

overview

Window 0

Location 10,874,076 – 10,874,172
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.71
Mean single sequence MFE -21.83
Consensus MFE -14.79
Energy contribution -15.15
Covariance contribution 0.36
Combinations/Pair 1.16
Mean z-score -1.88
Structure conservation index 0.68
SVM decision value 0.64
SVM RNA-class probability 0.807370
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10874076 96 - 23771897
----------GCCGGGGCAAAUUGUCUAAGAAAAGCCAAAAAAGGAAAUGGCA-AUGCAUUAAGAAAUAAGCAAUUUGCCUCAG-UCGCA--AGCAA-AAA-GAGCC--------AAGCA
----------((.((((((((((((.........((((..........)))).-........(....)..)))))))))))).(-.(...--.))..-...-.....--------..)). ( -23.20)
>DroPse_CAF1 2995 117 - 1
UUG--GGGGGGACGGGGCGAAUUGUCUAAGAAAAGACAAAAAAGGAAAUGGCAAAUGCAUUAAGAAAUAAGCAAUUUUCUUUUGCUUGCAACAGCAA-AAACGUGGCACGAGAUCAAGGA
(((--...(..(((((((...((((((......))))))((((((((((.((..................)).))))))))))))))((....))..-...)))..).)))......... ( -20.97)
>DroSim_CAF1 2036 96 - 1
----------GCCGGGGCAAAUUGUCUAAGAAAAGCCAAAAAAGGAAAUGGCA-AUGCAUUAAGAAAUAAGCAAUUUGCUUCAG-UCGCA--AGCAA-AAA-GAGCC--------AAGCA
----------((.((((((((((((.........((((..........)))).-........(....)..)))))))))))).(-.(...--.))..-...-.....--------..)). ( -20.40)
>DroEre_CAF1 1466 95 - 1
----------GCCC-GGCAAAUUGUCUAAGAAAAGCCAAAAAAGGAAAUGGCA-AUGCAUUAAGAAAUAAGCAAUUUGCCUCAG-ACGCA--AGCAAAAAG-GAGCC---------CGUA
----------((((-((((((((((.........((((..........)))).-........(....)..))))))))))...(-.(...--.)).....)-).)).---------.... ( -21.90)
>DroYak_CAF1 1945 95 - 1
----------GCCGGGGCAAAUUGUCUAAGAAAAGCCAAAAAAGGAAAUGGCA-AUGCAUUAAGAAAUAAGCAAUUUGCCUCAG-UCGCA--AGCAA-AAG-AAGCC---------AGGA
----------.((((((((((((((.........((((..........)))).-........(....)..)))))))))))).(-.(...--.))..-...-.....---------.)). ( -23.60)
>DroPer_CAF1 2477 119 - 1
UUAGGGGGGGGACGGGGCGAAUUGUCUAAGAAAAGACAAAAAAGGAAAUGGCAAAUGCAUUAAGAAAUAAGCAAUUUUCUUUUGCUUGCAACAGCAA-AAACGUGGCACGAGAUCAAGGA
.......(....)((..((..((((((......)))))).........((.((...(((..((((((........)))))).)))((((....))))-.....)).))))...))..... ( -20.90)
>consensus
__________GCCGGGGCAAAUUGUCUAAGAAAAGCCAAAAAAGGAAAUGGCA_AUGCAUUAAGAAAUAAGCAAUUUGCCUCAG_UCGCA__AGCAA_AAA_GAGCC________AAGGA
.............(((((((((((..((.......((......)).....((....)).........))..))))))))))).....((....))......................... (-14.79 = -15.15 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:55 2006