Locus 3753

Sequence ID 3L_DroMel_CAF1
Location 10,866,233 – 10,866,323
Length 90
Max. P 0.653364
window5855

overview

Window 5

Location 10,866,233 – 10,866,323
Length 90
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 85.65
Mean single sequence MFE -33.96
Consensus MFE -23.92
Energy contribution -24.80
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -1.83
Structure conservation index 0.70
SVM decision value 0.25
SVM RNA-class probability 0.653364
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10866233 90 - 23771897
UAC-----UCCUGCUCGACAUACUGGGGAUGGGUACGGAUGUACUCCAAGCUCCUAAGGAUGGCAGCUGGGAUUGGGGGAGGAGUGGGCAGGAGA
..(-----((((((((.((((.(((..........)))))))(((((...(((((((...(((...)))...))))))).)))))))))))))). ( -36.30)
>DroSec_CAF1 15349 90 - 1
UAC-----UCCUGCUCGACGUACUGGGGAUGGGUGCGGAUGUACUCCAGGCUCUUAAGGAUGGCAGCUGGGAUUGGGGGAGGAGUGGGCAGGAGA
..(-----((((((((..((((((.......)))))).....(((((...(((((((...(((...)))...))))))).)))))))))))))). ( -35.90)
>DroEre_CAF1 15762 90 - 1
UAA-----UCCUGGUCGACGUACUGGGGAUGGGUGCGGAUGUACUCCAGACUCCUCAGGAUUUCAGCGGGGAUUGGGGGAGGAGUGGGCAGGAGG
...-----(((((.((.((...((((((.((.((....)).)))))))).((((((..(((..(....)..))).))))))..)).))))))).. ( -33.50)
>DroYak_CAF1 15880 90 - 1
UAC-----UCCUUCUCGACGUACUGGGGAUGGGUGCGGAUGUACUCCAGGCUCUUCAGGAUGGCAACUGGGAUUGGGGGAGGAGUGGGCAGGAGG
(((-----((((((((..(((.((((((((((((((....)))).)))...))))))).))).(((......))))))))))))))......... ( -32.20)
>DroAna_CAF1 16635 95 - 1
AACGCUGGGCAGGCUCAACGUACUGGGGGUGGGUGCGGAUGUACUCCAGAGACUUCAGGAUGGCAGCUGGGAUUGGGGGAGGAGUGGGCACCCAG
.(((.((((....)))).)))........(((((((..((...((((...((..((((........))))..))...))))..))..))))))). ( -31.90)
>consensus
UAC_____UCCUGCUCGACGUACUGGGGAUGGGUGCGGAUGUACUCCAGGCUCUUCAGGAUGGCAGCUGGGAUUGGGGGAGGAGUGGGCAGGAGG
........((((((((..((((((.......)))))).....(((((...(((((...(((..(....)..)))))))).))))))))))))).. (-23.92 = -24.80 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:50 2006