Locus 3751

Sequence ID 3L_DroMel_CAF1
Location 10,859,653 – 10,859,752
Length 99
Max. P 0.649096
window5853

overview

Window 3

Location 10,859,653 – 10,859,752
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 73.94
Mean single sequence MFE -34.40
Consensus MFE -20.72
Energy contribution -21.36
Covariance contribution 0.64
Combinations/Pair 1.41
Mean z-score -1.58
Structure conservation index 0.60
SVM decision value 0.24
SVM RNA-class probability 0.649096
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10859653 99 - 23771897
AACUCUGUUUGCCAGGCAUCCACGGGCAGCAGGAGAGAUCUCUACCUCCAAAGGAUUACCAGGGGCAGCAGUCUGCCCUUAGCGGCCCCCGAAAAAUGG
.....((..(((...)))..)).((((.((.((((((....))..))))...((....))((((((((....)))))))).)).))))........... ( -31.20)
>DroSec_CAF1 9099 99 - 1
AACUCUGUUUUCUAGGCAUCCGCGGGUGGCAGGAGAGAUCUCCACCUCCAAAGGCUUACCAGGGGCAGCAGUCUGCCCUUAACGGCCCCCGGAAACUGG
......((((((...((....))(((.(((.((((....)))).(((....)))......((((((((....))))))))....))))))))))))... ( -36.80)
>DroEre_CAF1 8883 99 - 1
AACUCUCAUUUCCAGGCAUCCGCGGGAGGCAGGAGAGAUCUUCACCUCCAAAGGAUUACCAGGGGCAGCAGUUUGCCCUUGGCGGCCCCCGGGAAUUGG
......((.((((.(((((((...(((((..((((....)))).)))))...))))..((((((((((....))))))))))..)))....)))).)). ( -44.10)
>DroYak_CAF1 9046 99 - 1
AACUCUGCUUUGCAGGCAUCUGCGGGAGGCAGGAGAGAUCUCCACCUCCAAAGGAUUACCAGGGGCAGCAGUUUGCCCUUGUCGACCCCCGAGAAAUGG
..(((.....(((((....)))))(((((..((((....)))).)))))...((.((..(((((((((....)))))))))..)).))..)))...... ( -38.40)
>DroAna_CAF1 9892 97 - 1
AACUUCUCUUUUCAGAACUCUUCUAGUAACCGAAGGGAGCUUCACUUGCAAAGGCUUGUCGGAACAUGUGAUCAGCCACUAAUCUCCUCC--AAGCUCG
...((((......))))((((((........)))))).((.......))...((((((..(((....(((......))).....)))..)--))))).. ( -21.50)
>consensus
AACUCUGCUUUCCAGGCAUCCGCGGGAGGCAGGAGAGAUCUCCACCUCCAAAGGAUUACCAGGGGCAGCAGUCUGCCCUUAACGGCCCCCGAAAAAUGG
......................((((.(((.((((....)))).(((....)))......((((((((....))))))))....)))))))........ (-20.72 = -21.36 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:48 2006