Locus 3750

Sequence ID 3L_DroMel_CAF1
Location 10,848,328 – 10,848,426
Length 98
Max. P 0.667632
window5852

overview

Window 2

Location 10,848,328 – 10,848,426
Length 98
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 91.14
Mean single sequence MFE -38.95
Consensus MFE -35.77
Energy contribution -35.47
Covariance contribution -0.30
Combinations/Pair 1.13
Mean z-score -1.18
Structure conservation index 0.92
SVM decision value 0.28
SVM RNA-class probability 0.667632
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10848328 98 - 23771897
---CCUUUUUUUGGCCUAGUCGAAUAACGUGGCCAGCAAGUCGUCGCUGGCGUUGUUGUUGCUGCUGCCACUCGAGGGCGGCGUGUUAAGAUCGGGCUGAG
---.......(..(((..(((.(((((((..((((((........))))))..)))))))(((((((((.(....)))))))).))...)))..)))..). ( -41.00)
>DroSec_CAF1 56741 97 - 1
---CCUUU-UUGGGCCUAGUCGAAUAACGUGGCCAGCAAGUCGUCGCUGGCGUUGUUGUUGCUGCUGCCACUCGAGGGCGGCGUGUUAAGAUCGGGCUGAG
---.....-.(.((((..(((.(((((((..((((((........))))))..)))))))(((((((((.(....)))))))).))...)))..)))).). ( -40.00)
>DroSim_CAF1 60780 97 - 1
---CCCUU-UUGGGCCUAGUCGAAUAACGUGGCCAGCAAGUCGUCGCUGGCGUUGUUGUUGCUGCUGCCACUCGAGGGCGGCGUGUUAAGAUCGGGCUGAG
---.....-.(.((((..(((.(((((((..((((((........))))))..)))))))(((((((((.(....)))))))).))...)))..)))).). ( -40.00)
>DroEre_CAF1 58664 98 - 1
--UCCCUU-UCGGGUCUAGUCGAAUAACGUGGCCAGCAAGUCGUCGCUGGCGUUGUUAUUGCUGCUGCCACUCGAGGGCGGAGUGUUAAGAUCGGGCUGCG
--......-...((((..(((.(((((((..((((((........))))))..)))))))(((.(((((.(....))))))))).....)))..))))... ( -35.20)
>DroYak_CAF1 59298 100 - 1
UCUCCUGU-UCGGGUCUACUCGAAUAACGUGGCCAGCAAGUCGUCGCUGGCGUUGUUGUUGCUGCUGCCACUCGAGGGCGGCGUGUUAAGAUCGGGCUGGG
...((.((-((((.(((.....(((((((..((((((........))))))..)))))))(((((((((.(....)))))))).))..))))))))).)). ( -38.80)
>DroAna_CAF1 49760 97 - 1
---GAUCU-CCCGGCUUAGUCGAAUAACGUGGCCAGCAGGUCGUCGCUGGCGUUGUUGUUGCUGCUGCCACUCGAGGGCGGAGUGUUGAGGUCGGGCUGUG
---.....-((((((((...(.(((((((..((((((........))))))..)))))))(((.(((((.(....))))))))))...))))))))..... ( -38.70)
>consensus
___CCUUU_UCGGGCCUAGUCGAAUAACGUGGCCAGCAAGUCGUCGCUGGCGUUGUUGUUGCUGCUGCCACUCGAGGGCGGCGUGUUAAGAUCGGGCUGAG
............(((((..((.(((((((..((((((........))))))..)))))))(((((((((.(....)))))))).))...))..)))))... (-35.77 = -35.47 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006