Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,089,834 – 1,089,929 |
Length | 95 |
Max. P | 0.686246 |
Location | 1,089,834 – 1,089,929 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 95.77 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -23.62 |
Energy contribution | -24.12 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.89 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1089834 95 + 23771897 AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGGGGGUGGCAUGAUUGCCAACUGAGUGAUUUUUGUUUGUGGCACG ........(((.((((((((.(((....))).)))))))).)))....((((...(((((....))))).))))((.((........)).))... ( -27.70) >DroSec_CAF1 7279 94 + 1 AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG-GGUGGCACGAUUGCCAACUGAGUGAUUUUCGUUUGUGGCAUG ........(((.((((((((.(((....))).)))))))).)))....((((-..(((((....))))).))))((.((........)).))... ( -26.80) >DroEre_CAF1 1371 94 + 1 AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG-GGUGGAAUGAUUGCCAACUGAGUGAUUUUCGUUUGUGGCAUG ........(((.((((((((.(((....))).)))))))).)))..(((((.-.......)))))((((..((((.....))))....))))... ( -23.40) >DroYak_CAF1 2846 94 + 1 AAUUAUAGAAGGGAAUCUGCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG-GGUGGCAUGAUUGCCAACUGGCUGAUUUUCGUUUGUGGCAUG ..(((((((.(..((((..((..(((.(.(....).).)))..)).((((((-..(((((....))))).))))))))))..).))))))).... ( -28.30) >consensus AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG_GGUGGCAUGAUUGCCAACUGAGUGAUUUUCGUUUGUGGCAUG ..(((((((((.((((((((.(((....))).)))))))).)))(((((((..(((((((....)))).)))...)))))))...)))))).... (-23.62 = -24.12 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:24 2006