Locus 375

Sequence ID 3L_DroMel_CAF1
Location 1,089,834 – 1,089,929
Length 95
Max. P 0.686246
window553

overview

Window 3

Location 1,089,834 – 1,089,929
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 95.77
Mean single sequence MFE -26.55
Consensus MFE -23.62
Energy contribution -24.12
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.89
SVM decision value 0.32
SVM RNA-class probability 0.686246
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1089834 95 + 23771897
AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGGGGGUGGCAUGAUUGCCAACUGAGUGAUUUUUGUUUGUGGCACG
........(((.((((((((.(((....))).)))))))).)))....((((...(((((....))))).))))((.((........)).))... ( -27.70)
>DroSec_CAF1 7279 94 + 1
AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG-GGUGGCACGAUUGCCAACUGAGUGAUUUUCGUUUGUGGCAUG
........(((.((((((((.(((....))).)))))))).)))....((((-..(((((....))))).))))((.((........)).))... ( -26.80)
>DroEre_CAF1 1371 94 + 1
AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG-GGUGGAAUGAUUGCCAACUGAGUGAUUUUCGUUUGUGGCAUG
........(((.((((((((.(((....))).)))))))).)))..(((((.-.......)))))((((..((((.....))))....))))... ( -23.40)
>DroYak_CAF1 2846 94 + 1
AAUUAUAGAAGGGAAUCUGCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG-GGUGGCAUGAUUGCCAACUGGCUGAUUUUCGUUUGUGGCAUG
..(((((((.(..((((..((..(((.(.(....).).)))..)).((((((-..(((((....))))).))))))))))..).))))))).... ( -28.30)
>consensus
AAUUAUAGAAGGGAAUCUCCAGGUAAUUGCCAGGGGAUUUGUUUGAAGUCGG_GGUGGCAUGAUUGCCAACUGAGUGAUUUUCGUUUGUGGCAUG
..(((((((((.((((((((.(((....))).)))))))).)))(((((((..(((((((....)))).)))...)))))))...)))))).... (-23.62 = -24.12 +   0.50) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:24 2006