Locus 3749

Sequence ID 3L_DroMel_CAF1
Location 10,845,958 – 10,846,067
Length 109
Max. P 0.643554
window5851

overview

Window 1

Location 10,845,958 – 10,846,067
Length 109
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 86.44
Mean single sequence MFE -45.78
Consensus MFE -37.58
Energy contribution -37.83
Covariance contribution 0.25
Combinations/Pair 1.11
Mean z-score -1.87
Structure conservation index 0.82
SVM decision value 0.23
SVM RNA-class probability 0.643554
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10845958 109 + 23771897
AAAGUGCUGGAAUGCAGCAGGCAGGUGGCAUGUGCCCGGCGGGUCCGGGCGCCGUCGCCACCACCGGCAAUCCCUACCAGAAUCAAGGGUGAGUUCUGA-AACUCCAU-AC
....((((((..(((.....)))((((((((((((((((.....))))))).))).)))))).))))))..((((..........)))).(((((....-)))))...-.. ( -46.10)
>DroSec_CAF1 54377 109 + 1
AAAGUGCUGGAAUGCAGCAGGCAGGUGGCAUGUGCCCGGCGGGUCCGGGCGCCGUCGCCACCACCGGCAAUCCCUACCAGAAUCAAGGGUGAGUUCUGA-AACUCCAU-UC
....((((((..(((.....)))((((((((((((((((.....))))))).))).)))))).))))))..((((..........)))).(((((....-)))))...-.. ( -46.10)
>DroSim_CAF1 58593 109 + 1
AAAGUGCUGGAAUGCAGCAGGCAGGUGGCAUGUGCCCGGCGGGUCCGGGCGCCGUCGCCACCACCGGCAAUCCCUACUAUAUUCAAGGGUGAGUUUUGA-AACUCCAU-AC
....((((((..(((.....)))((((((((((((((((.....))))))).))).)))))).))))))..((((..........)))).(((((....-)))))...-.. ( -46.20)
>DroEre_CAF1 56266 109 + 1
AAAGCGCUGGAAUGCAGCAGGGAGGUGGCAUGUGCCCGGCGGGUCCGGGCGCCGUGGCCACCACCGGCAAUCCCUACCAGAAUCAAGGGUGAGUUGUAC-AGCUCAAC-UC
...((((((.....))))..((.((((((..((((((((.....))))))))....)))))).)).))...((((..........))))((((((....-))))))..-.. ( -48.50)
>DroYak_CAF1 56883 111 + 1
AAAGUGCUGGAAUGCAGCAGGCAGGUGGCAUGUGCCCGGCUGGUCCGGGCGCCGUGGCCACCACCGGCAAUCCCUACCAGAAUCAAGGGUGAGUUCUCUGAUCUUUACAUU
....((((((..(((.....)))((((((..((((((((.....))))))))....)))))).))))))...............((((((.((....)).))))))..... ( -45.90)
>DroAna_CAF1 47447 104 + 1
AGGGCGGCGGUAUGCAGCAGGGAGGUGGCAUGUGCCCGGCGGGUCCGGGUGGCGUGUCCACCACCGGCAAUCCUUACCAGAACCAAGGGUAAGUAGUCU------CUU-UG
((((.((((((.(((....((..((((((((((((((((.....)))))).))))).))))).)).))))))((((((.........))))))..))).------)))-). ( -41.90)
>consensus
AAAGUGCUGGAAUGCAGCAGGCAGGUGGCAUGUGCCCGGCGGGUCCGGGCGCCGUCGCCACCACCGGCAAUCCCUACCAGAAUCAAGGGUGAGUUCUGA_AACUCCAU_UC
.....(((((..(((.....)))((((((((((((((((.....))))))).))).)))))).)))))...((((..........))))...................... (-37.58 = -37.83 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:46 2006