| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,843,026 – 10,843,124 |
| Length | 98 |
| Max. P | 0.957003 |
| Location | 10,843,026 – 10,843,124 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.84 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -13.02 |
| Energy contribution | -13.52 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.957003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10843026 98 + 23771897 -AACCGAUACU-CAUAC------------------CCAAAUCUAAACCAAAACCUAAACCUAAACCCUGAGCCCAUUUGACAUUUUCGGGCUUAAAUGUCAUAGCAAAUCGAGGGGAA -..........-.....------------------.............................((((((.......((((((((........)))))))).......)).))))... ( -15.64) >DroSec_CAF1 51557 92 + 1 -AACCGAUACU-CAUAC------------------CCAAACCU------AAGCCUAAACCUAAACCCUGAGCCCAUUUGACAUUUUCGGGCUUAAAUGUCAUAGCAAAUCGAGGGGAA -..........-.....------------------........------...............((((((.......((((((((........)))))))).......)).))))... ( -15.64) >DroSim_CAF1 55757 93 + 1 -AACCGAUACUUUAUAC------------------CCAAACCC------AAACCUAAACCUAAACCCUGAGCCCAUUUGACAUUUUCGGGCUUAAAUGUCAUAGCAAAUCGAGGGGAA -................------------------........------...............((((((.......((((((((........)))))))).......)).))))... ( -15.64) >DroEre_CAF1 53417 111 + 1 AAACCCAUACU-CAUACCAAUAGCCAAACAUAAGCCUAAACCU------AAACCUAAACCUAAACCCUGAGCCCAUUUGACAUUUUCGGGCUUAAAUGUCACAGCAAAUCGAGGGGAA ...(((...((-(..............................------..................(((((((.............)))))))..(((....)))....)))))).. ( -16.22) >DroYak_CAF1 53951 106 + 1 AAACCCAUACU-CAUACCAAUACUCAAU-----ACUCAAACAU------AAACCUAAACCUAAACCCUGAGCCCAUUUGACAUUUUCGGGCUUAAAUGUCACAGCAAAUCGAGGGGAA ...(((...((-(...............-----..........------..................(((((((.............)))))))..(((....)))....)))))).. ( -16.22) >DroPer_CAF1 100965 77 + 1 -GGGCGCGGUG-G-----------------------------------AAAA--CAAAUGUAAGCCCUGAGCCCAUUUGACAUU-UGGGGCUUAAAUGUCACAGCAAAUCAAGAAAA- -((((.(((.(-(-----------------------------------...(--(....))...))))).))))...(((((((-((.....)))))))))................- ( -22.20) >consensus _AACCGAUACU_CAUAC__________________CCAAACCU______AAACCUAAACCUAAACCCUGAGCCCAUUUGACAUUUUCGGGCUUAAAUGUCACAGCAAAUCGAGGGGAA ................................................................((((((.......((((((((........)))))))).......)).))))... (-13.02 = -13.52 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:43 2006