Locus 3746

Sequence ID 3L_DroMel_CAF1
Location 10,841,227 – 10,841,319
Length 92
Max. P 0.758816
window5847

overview

Window 7

Location 10,841,227 – 10,841,319
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 94.18
Mean single sequence MFE -20.93
Consensus MFE -16.79
Energy contribution -16.90
Covariance contribution 0.11
Combinations/Pair 1.06
Mean z-score -2.76
Structure conservation index 0.80
SVM decision value 0.50
SVM RNA-class probability 0.758816
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10841227 92 + 23771897
AAAGCGACUCGCACUGAAACGCUGAAACAAAGCAAUGCGGCGUCAUCACAGAUCCCGCAUUCCUCAGCUCUCGACAAAAAAAAACAACCUUC
...(((...))).((((...(((.......)))(((((((.(((......))).)))))))..))))......................... ( -20.20)
>DroSec_CAF1 49932 91 + 1
GAGGCGACUCGAACUGAAACGCUGAAACAAAGCCAUGCGGCGUCAUCACAGAUCCCGCAUUCCUCACCUCUCGACAAAAAAAGA-AACCUUC
((((.((.............(((.......))).((((((.(((......))).))))))...)).))))..............-....... ( -20.40)
>DroSim_CAF1 54053 91 + 1
GAGGCGACUCGAACUGAAACGCUGAAACAAAGCAAUGCGGCGUCAUCACAGAUCCCGCAUUCCUCACCUCUCCACAAAAAAAAA-AACCUUC
((((.((.............(((.......)))(((((((.(((......))).)))))))..)).))))..............-....... ( -22.20)
>consensus
GAGGCGACUCGAACUGAAACGCUGAAACAAAGCAAUGCGGCGUCAUCACAGAUCCCGCAUUCCUCACCUCUCGACAAAAAAAAA_AACCUUC
..((((..((.....))..)))).......((.(((((((.(((......))).))))))).))............................ (-16.79 = -16.90 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:42 2006