| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,840,190 – 10,840,288 |
| Length | 98 |
| Max. P | 0.919209 |
| Location | 10,840,190 – 10,840,288 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 83.21 |
| Mean single sequence MFE | -13.51 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10840190 98 + 23771897 UAAUAUUCAACACAAAGCUCAAAUGAUAUGAUCUGAAACUAUUGAUUAUCUAUUUGAGUGGUUUUCUAGAGUACAUCACUUUCUAAUGC-AAUUUUUUC ...(((((........(((((((((..((((((..........)))))).))))))))).........)))))................-......... ( -14.53) >DroSec_CAF1 48927 82 + 1 UAAUAUUCAGCACAAAACUCAAAUGAUAUGAUCUUAAACUAUUGAUUAUCUAUUUGAGUGGUUUUC-----------------UAAUGCAAAUUACUUC .........(((....(((((((((..((((((..........)))))).)))))))))((....)-----------------)..))).......... ( -13.40) >DroSim_CAF1 53054 82 + 1 UAAUAUUCAACACAAAGCUCAAAUGAUAUGAUCUGAAACUAUUGAUUAUCUAUUUGAGUGGUUUUC-----------------UAAUGCUAAUUAUUUC ...........((...(((((((((..((((((..........)))))).))))))))).))....-----------------................ ( -12.60) >consensus UAAUAUUCAACACAAAGCUCAAAUGAUAUGAUCUGAAACUAUUGAUUAUCUAUUUGAGUGGUUUUC_________________UAAUGC_AAUUAUUUC ...........((...(((((((((..((((((..........)))))).))))))))).))..................................... (-12.72 = -12.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:41 2006