Locus 3744

Sequence ID 3L_DroMel_CAF1
Location 10,839,158 – 10,839,253
Length 95
Max. P 0.989449
window5845

overview

Window 5

Location 10,839,158 – 10,839,253
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 95.40
Mean single sequence MFE -17.88
Consensus MFE -16.33
Energy contribution -16.50
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.91
SVM decision value 2.16
SVM RNA-class probability 0.989449
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10839158 95 + 23771897
UGCUGACCAUCUGUAUUAUUUGCAUUGGAUUUUUAAUCAAAAAUUGCGCGAUUUCUCUUCGCUUUUUUGC--UACAGCUUUUUCUUCGGCUUCUCUA
.((((((((..((((.....)))).))).........((((((....((((.......)))).)))))).--.............)))))....... ( -17.30)
>DroSec_CAF1 47889 95 + 1
UGCUGACCAUCUGUAUUAUUUGCAUUGGGUUUUUAAUCAAAAAUUGCGCGAUUUCUCUUCGCUUUUUAGC--CGCAGCUUUUUCUUCGGCUUCUCUA
.((...(((..((((.....)))).)))((((((....)))))).))((((.......)))).....(((--((.((......)).)))))...... ( -18.50)
>DroSim_CAF1 52029 95 + 1
UGCUGACCAUCUGUAUUAUUUGCAUUGGGUUUUUAAUCAAAAAUUGCGCGAUUUCUCUUCGCUUUUUUGC--CGCAGCUUUUUCUUCGGCUUCUCUA
.((...(((..((((.....)))).)))((((((....)))))).))((((.......))))......((--((.((......)).))))....... ( -17.80)
>DroEre_CAF1 49729 95 + 1
UGCUGACCAUCUGUAUUAUUUGCAUUGGGUUUUUAAUCAAAAAUUGCGCGAUUUCUCUUCGCUUUUUUGC--CGCAGCUUUUUCUUCGGCUUCUCUA
.((...(((..((((.....)))).)))((((((....)))))).))((((.......))))......((--((.((......)).))))....... ( -17.80)
>DroYak_CAF1 49463 95 + 1
UGCUGACCAUCUGUAUUAUUUGCAUUGGGUUUUUAAUCAAAAAUUGCGCGAUUUCUCUUCGCUUUUUUGC--CGCAGCUUUUUCUUCGGCUUCUCUA
.((...(((..((((.....)))).)))((((((....)))))).))((((.......))))......((--((.((......)).))))....... ( -17.80)
>DroAna_CAF1 41350 97 + 1
UGCUGACCAUCUGUAUUAUUUGCAUUGGAUUUUUAAUCAAAAAUUGUGCGAUUUCUCUUCGCUUUUUUGCGUUGCAGCUCUUUCUUCGCCUUAUUUU
.((((.(((..((((.....)))).))).....((((((((((....((((.......)))).)))))).))))))))................... ( -18.10)
>consensus
UGCUGACCAUCUGUAUUAUUUGCAUUGGGUUUUUAAUCAAAAAUUGCGCGAUUUCUCUUCGCUUUUUUGC__CGCAGCUUUUUCUUCGGCUUCUCUA
.((((.(((..((((.....)))).))).........((((((....((((.......)))).)))))).....))))................... (-16.33 = -16.50 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:40 2006