Locus 3741

Sequence ID 3L_DroMel_CAF1
Location 10,831,906 – 10,831,997
Length 91
Max. P 0.560879
window5842

overview

Window 2

Location 10,831,906 – 10,831,997
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 82.53
Mean single sequence MFE -19.70
Consensus MFE -13.65
Energy contribution -14.37
Covariance contribution 0.72
Combinations/Pair 1.11
Mean z-score -1.58
Structure conservation index 0.69
SVM decision value 0.05
SVM RNA-class probability 0.560879
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10831906 91 - 23771897
UU---------UUUUUUUCGAAAACUUUUUACGCGAUUUUUCGAAA----AUUUCUGAUAACUGUUUCACUGAGCCGUGGCUUUG--AGAUUUUGGCCUGGCUUUU
..---------...((((((((((.((.......)).)))))))))----)....(((........)))..((((((.((((...--.......)))))))))).. ( -19.50)
>DroSec_CAF1 40936 90 - 1
UU----------UUUUUUCGAAAACUUUUUACGCGAUUUUUCGAAA----AUUUCUGAUAACUGUUUCACUGAGCCGUGGCUUUG--AGAUUUUGGCCUGGCUUUU
..----------..((((((((((.((.......)).)))))))))----)....(((........)))..((((((.((((...--.......)))))))))).. ( -19.50)
>DroSim_CAF1 44796 91 - 1
UU---------UUUUUUUCGAAAACUUUUUACGCGAUUUUUCGAAA----AUUUCUGAUAACUGUUUCACUGAGCCGUGGCUUUG--AGAUUUUGGCCUGGCUUUU
..---------...((((((((((.((.......)).)))))))))----)....(((........)))..((((((.((((...--.......)))))))))).. ( -19.50)
>DroEre_CAF1 42574 87 - 1
-------------UUUUUCGAAAAUUAUUUACGCGAUUUUUCGAAU----AUUUCUGAUAACUGUUUCACUGAGCCGUGGCUUUG--AGAUUUUGGCCUGGCUUUU
-------------...((((((((.............)))))))).----.....(((........)))..((((((.((((...--.......)))))))))).. ( -18.22)
>DroYak_CAF1 42200 90 - 1
UA----------UUUUUUCGAAAAUUAUUUACGCGUUUUUUCGAAA----AUUUCUGAUAACUGUUUCACUGAGCCGUGGCUUUG--AGAUUUUGGCCUGGCUUUU
..----------..((((((((((.............)))))))))----)....(((........)))..((((((.((((...--.......)))))))))).. ( -20.02)
>DroAna_CAF1 34812 100 - 1
UUGAGUUUUGCGUUGAUUUGAAAACUU----CGUGAUUC-UCGUAACCGCUUUUCUAAAAACUGUUUCACUUGGGCCUGGCUUCAGUGGAUUGUGGCCUGGCUU-G
..(((..(..((...............----))..)..)-))..............................(((((.((((.(((....))).)))).)))))-. ( -21.46)
>consensus
UU__________UUUUUUCGAAAACUUUUUACGCGAUUUUUCGAAA____AUUUCUGAUAACUGUUUCACUGAGCCGUGGCUUUG__AGAUUUUGGCCUGGCUUUU
................((((((((.............))))))))..........................((((((.((((............)))))))))).. (-13.65 = -14.37 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:37 2006