| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,831,490 – 10,831,586 |
| Length | 96 |
| Max. P | 0.597732 |
| Location | 10,831,490 – 10,831,586 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.81 |
| Mean single sequence MFE | -27.94 |
| Consensus MFE | -10.82 |
| Energy contribution | -10.44 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10831490 96 - 23771897 CCUCGCGGGCCCCUUGCUG---UCGGUUUCCA-UACGGAAAAA-----------AGGAAAAUAGUAGCUAUUCUACUCCGUUU-UCUGCUA-------CCUUUUGGUCGGCUCUCUC-UC ......(((((....((..---....(((((.-...)))))..-----------.((((((((((((.....)))))..))))-))))).(-------((....))).)))))....-.. ( -23.00) >DroSec_CAF1 40523 93 - 1 CCUCGCGGGCCCCUUGCUG---UUGGUUUCCA-UACGAGAAAA-----------AGGAAAAUAGUAGUUUUUCUACUCCGCUU-UCUGCUA-------CCUUUUGGUCGGCUCUCU---- ....(((((..((......---..))..))).-..(((..(((-----------(((.....(((((.....)))))..((..-...))..-------))))))..))))).....---- ( -23.30) >DroSim_CAF1 44383 93 - 1 CCUCGCGGGCCCCUUGCUG---UUGGUUUCCA-UACGAGAAAG-----------AGGAAAAUAGUAGCUUUUCUACUCCGUUU-UCUACUA-------CCUUUUGGUCGGCUCUCU---- .((((.(((..((......---..))..))).-..))))..((-----------(((((((((((((.....)))))..))))-))..(.(-------((....))).).))))..---- ( -22.00) >DroEre_CAF1 42139 91 - 1 CCUCGCGGGCCCCUUGCUU---UUGCUUUCCA-UGCGGAAAAA-----------AGGAAAAUAGUAGUU-UUCUACUCCACUU-UCUGCUA-------CCUUUUUGUCGGCUCUC----- ......(((((((((..((---((((......-.))))))..)-----------)))((((..(((((.-.............-...))))-------)..))))...)))))..----- ( -22.33) >DroYak_CAF1 41725 96 - 1 CCUCGCGGGCCCCUUGCUU---UUGCUUUCCA-UGCGGAAAAA-----------AGGCAUAUAGUAGUUUUUCUACUACACUU-UCUGCUA-------CCUUUUGCACGGCUCUCUC-GC ......(((((...(((((---((..(((((.-...)))))))-----------)))))..((((((.....)))))).....-..(((..-------......))).)))))....-.. ( -25.00) >DroAna_CAF1 34314 119 - 1 CCUCUCCAUUCCCUGGCUUGGCUGGGUCUCUCUUGAGAGAGAGAGCGACGUAGCAGAAACGUAGUAGAU-UUCUACUGCCUUUUGCUGCUAGUAGUAGCCUUCGGGCCUACUCCGUCAUU .(((((.....((..((...))..))(((((....)))))))))).((((((((((((..(((((((..-..))))))).))))))))).(((((..(((....))))))))..)))... ( -52.00) >consensus CCUCGCGGGCCCCUUGCUG___UUGGUUUCCA_UACGAAAAAA___________AGGAAAAUAGUAGUUUUUCUACUCCGCUU_UCUGCUA_______CCUUUUGGUCGGCUCUCU____ ......((((((((............((((......))))..............))).....(((((.....)))))...............................)))))....... (-10.82 = -10.44 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:36 2006