| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,827,452 – 10,827,558 |
| Length | 106 |
| Max. P | 0.818563 |
| Location | 10,827,452 – 10,827,558 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 84.24 |
| Mean single sequence MFE | -17.13 |
| Consensus MFE | -14.37 |
| Energy contribution | -13.93 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.818563 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10827452 106 - 23771897 UAUUUUAGU-UAAGAGCUAACUAAUUGUAGGGUAGUAAAAAGGCACCCACAAAAACGUGGGGGAAAAAAAACAU-------AAAGCCAAAAGCAGCAGCAGUAAACGAUAAACU .....((((-((.....))))))(((((.............(((.(((((......)))))(.........)..-------...)))....((....)).....)))))..... ( -19.20) >DroEre_CAF1 37865 102 - 1 UAAUUAAGCUUAAGAGCUAACUAAUUGUAGGGUAGUAAGAAAGCACCCACAAAACCGA--AA---AAAAAACAU-------AAAGCUAAAAGCAGCAGCAGUAAACGAUGAACU .......((((...((((.((.....)).((((.((......))))))..........--..---.........-------..))))..))))..................... ( -14.90) >DroYak_CAF1 37259 109 - 1 UAUUUAAGCUUAAGAGCUAACUAAUUGUAGGGUAGCAAGAAAGCACCCACAAAACCGA--AA---AAAAAACAUAAAAAAUAAAGCUAAAAGCAGCGGCAGUAAACGAUGAACU .......((((...((((.((.....)).((((.((......))))))..........--..---..................))))..))))..((........))....... ( -17.30) >consensus UAUUUAAGCUUAAGAGCUAACUAAUUGUAGGGUAGUAAGAAAGCACCCACAAAACCGA__AA___AAAAAACAU_______AAAGCUAAAAGCAGCAGCAGUAAACGAUGAACU ...............(((......((((.((((.((......))))))))))................................((.....))...)))............... (-14.37 = -13.93 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:33 2006