Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,826,441 – 10,826,539 |
Length | 98 |
Max. P | 0.926691 |
Location | 10,826,441 – 10,826,539 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 99.18 |
Mean single sequence MFE | -37.04 |
Consensus MFE | -36.36 |
Energy contribution | -36.56 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.98 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10826441 98 + 23771897 UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA ..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... ( -37.40) >DroSec_CAF1 35447 98 + 1 UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA ..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... ( -37.40) >DroSim_CAF1 37053 98 + 1 UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA ..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... ( -37.40) >DroEre_CAF1 36875 98 + 1 UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGGCGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA ...................(((((((((.....)))))....(((((((...(((((....)))))((((((......))))))))))).)))))).. ( -37.60) >DroYak_CAF1 36239 98 + 1 UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUCCGAUGGA ..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))..(((......))). ( -35.40) >consensus UUGCAGAUACUCAGAUACACGUCCGCACUCAUUGUGCGAGCUGCUCGACGUCGUCGGAAUUCCGAUGGCGAUGAUGAGGUUGCCGCCGAUGCGAUGGA ..((((...((((.......(..(((((.....)))))..)...(((.(((((((((....))))))))).))))))).))))(((....)))..... (-36.36 = -36.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:32 2006