| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,824,970 – 10,825,076 |
| Length | 106 |
| Max. P | 0.669547 |
| Location | 10,824,970 – 10,825,076 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.48 |
| Mean single sequence MFE | -28.16 |
| Consensus MFE | -14.88 |
| Energy contribution | -16.41 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.669547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10824970 106 - 23771897 AUAACUUCUCUUU------UAAUAAGCCUAAUUAAAGCCACAGAAAACACCAUUUGGCUUGGGCUAUUCCUGCAGGCAGGCUUAACAGUGUUAAAUUGGGUUUUAUUAGAGA ......(((((..------(((..(((((((((.(((((.((((........))))(((((((.....))..))))).)))))(((...))).))))))))))))..))))) ( -25.70) >DroSec_CAF1 34003 106 - 1 AUAACUUCUCUAU------UAAUAAGCCUAAUUAAAGCCACAGAAAACACCAUUUGGCUUGGGCCAUUCCUGCAGGCAGGCUUAAUAGUGUUAAAUUGGGUUUUAUUAGAGA ......((((((.------....((((((((((.((((((..............))))))(((((...((....))..)))))..........))))))))))...)))))) ( -28.34) >DroSim_CAF1 35611 106 - 1 AUAACUUCUCUAU------UAAUAAGCCUAAUUAAAGCCACAGAAAACACCAUUUGGCCUGGGCCAUUCCUGCAGGCAGGCUUAACAGUGUUAAAUUGGGUUUUAUUAGAGA ......((((((.------....((((((((((.(((((.((((........))))(((((((.....))..))))).)))))(((...))).))))))))))...)))))) ( -29.70) >DroEre_CAF1 35409 106 - 1 AUAACUUCUCUAU------UAAUAAGCCUAAUUAAAGCCACUGAAAACAGCAUUUGGCUUGGGUUUUUCCUGCAGGCUGGCUUAAUAGUGUUCAAUUAGGUUUUAUUAGAGU .......(((((.------....((((((((((.....(((((((..((((.....((..(((....))).))..))))..))..)))))...))))))))))...))))). ( -28.00) >DroYak_CAF1 34722 106 - 1 AUAACUUCUCUAU------UAAUAAGCCUAAUUAAAGCCACUGAAAACAGCAAUUGGCUUGGGUUUUUCCUGCAGGCUGGCUUAAUAGUGUUAAAUUGGGUUUUAUUAGAGA ......((((((.------....((((((((((.....(((((((..((((.....((..(((....))).))..))))..))..)))))...))))))))))...)))))) ( -29.10) >DroAna_CAF1 28342 103 - 1 AUGACUUCCCAAUGAGGUCUAAUAGCUCUAAUUAAAGUCCUUCAC----GCAUC-----UGGGGCAUUGUUGGCCAGUGACGUAAAAUGGUUAAAUUGGAUUUGAUUGGAGA ..((((((.....))))))......(((((((((((.(((...((----((((.-----..((.((....)).)).))).)))..(((......))))))))))))))))). ( -28.10) >consensus AUAACUUCUCUAU______UAAUAAGCCUAAUUAAAGCCACAGAAAACACCAUUUGGCUUGGGCCAUUCCUGCAGGCAGGCUUAAUAGUGUUAAAUUGGGUUUUAUUAGAGA ......((((((...........((((((((((.((((((..............))))))(((((...((....))..)))))..........))))))))))...)))))) (-14.88 = -16.41 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:31 2006