Locus 3734

Sequence ID 3L_DroMel_CAF1
Location 10,805,670 – 10,805,763
Length 93
Max. P 0.999226
window5831

overview

Window 1

Location 10,805,670 – 10,805,763
Length 93
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 91.97
Mean single sequence MFE -24.58
Consensus MFE -20.76
Energy contribution -20.92
Covariance contribution 0.16
Combinations/Pair 1.15
Mean z-score -2.91
Structure conservation index 0.84
SVM decision value 3.45
SVM RNA-class probability 0.999226
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10805670 93 - 23771897
CUAUUU-CCCCCUGCCAUUAGGCUUAACUC-UUAGUAAUCUUAAGUCUCCUCUGAGCGGACAACUCCCUUGAGCGGACACUUCUUUCUGGCUUAA
......-......(((((((((.(((....-....))).)))))((((.(((.(((.(((....))))))))).)))).........)))).... ( -19.70)
>DroSec_CAF1 14704 95 - 1
CUAUUUUGCCCCUGCCAUUAGGCUUAACUCCUUAGUAAGCUUAAGUCUGCUCUGAGCGGGCAACUCCCUUGAGCGGACACUUCUUUCUGGCUUAA
.............(((((((((((((.((....)))))))))))((((((((.(((.(((....)))))))))))))).........)))).... ( -31.50)
>DroSim_CAF1 16119 95 - 1
CUAUUUUGCCCCUUCCAUUAGGCUUAACUCCUUAGUAAGCUUAAGUCUGCUCUGAGCGGACAACUCCCUUGAGCGGACACUUCUUUCAGGCUUAA
.......(((.......(((((((((.((....)))))))))))((((((((.(((.(((....))))))))))))))..........))).... ( -31.10)
>DroEre_CAF1 16364 94 - 1
CUAUUU-UCCCCUGCUAUUAGGCUUAACUCCUUAGUAAGCUUAAAUCUCCUCUGAGCGGACAACUCCCUUGAGCGGACACUUCCUUCUGGCUUAA
......-......(((((((((((((.((....))))))))))).(((.(((.(((.(((....))))))))).)))..........)))).... ( -20.40)
>DroYak_CAF1 15288 93 - 1
UU-UUU-UCCUCUGCCAUUAGGCUUAGCUCCUUAGUAAGCUUAAAUCUCUUCUGAGCGGACAACUCCCUUGAGCGGACACUUCUUUCAGGCUUAA
..-...-......(((.(((((((((.((....))))))))))).(((.(((.(((.(((....))))))))).)))...........))).... ( -20.20)
>consensus
CUAUUU_GCCCCUGCCAUUAGGCUUAACUCCUUAGUAAGCUUAAGUCUCCUCUGAGCGGACAACUCCCUUGAGCGGACACUUCUUUCUGGCUUAA
.............(((.((((((((.(((....)))))))))))((((.(((.(((.(((....))))))))).))))..........))).... (-20.76 = -20.92 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:27 2006