Locus 3731

Sequence ID 3L_DroMel_CAF1
Location 10,799,904 – 10,800,000
Length 96
Max. P 0.569899
window5826

overview

Window 6

Location 10,799,904 – 10,800,000
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 97.08
Mean single sequence MFE -27.86
Consensus MFE -25.50
Energy contribution -25.74
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.20
Structure conservation index 0.92
SVM decision value 0.07
SVM RNA-class probability 0.569899
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10799904 96 - 23771897
ACAUCAAUGGCAAACGACCUUCGCUGACAAAAUGCACAGUGGCAUGGAAAUUUCGCAGAUGCUGGGUUGAAAUUUUCCUGGUGGGGGUAAUUGAUG
.(((((((........(((((((((......((((......))))(((((((((((((...)))...))))))))))..))))))))).))))))) ( -27.00)
>DroSec_CAF1 9077 96 - 1
ACAUCAAUGGCAAACGACCUUCGCUGACAAAACGCACAGUGGCAUGGAAAUUUCGCAGAUGCUGAGUUGGAAUUUUCCUGGUGGGGGUAAUUGAUG
.(((((((.((...(.(((.((((((..........))))))...(((((.(((.(((........)))))).))))).))).)..)).))))))) ( -26.10)
>DroSim_CAF1 10720 96 - 1
ACAUCAAUGGCAAACGACCUUCGCUGACAAAAUGCACAGUGGCAUGGAAAUUUCGCAGAUGCUGGGUUGGAAUUUUCCUGGUGGGGGUAAUUGAUG
.(((((((........(((((((((......((((......))))(((((.(((.(((........)))))).))))).))))))))).))))))) ( -27.80)
>DroEre_CAF1 10758 96 - 1
ACAUCAAUGGCAAACGACCUUCGCUGACAAAAUGCACAGUGGCAUGGAAAUUUCGCAGAUGCUGGGUUGGAAUUUUCGGGGUGGGGGUAAUUGAUG
.(((((((........(((((((((......((((......))))(((((((((((((...)))...))))))))))..))))))))).))))))) ( -27.60)
>DroYak_CAF1 9389 96 - 1
ACAUCAAUGGCAAACGACCUUCGCUGACAAAAUGCACAGUGGCAUGGCAAUUUCGCAGAUGCUGGGCUGGAAUUUUCCUGGUGGGGGUAAUUGAUG
.(((((((........((((((((((..(((((...(((((((((.((......))..)))))..))))..)))))..)))))))))).))))))) ( -30.80)
>consensus
ACAUCAAUGGCAAACGACCUUCGCUGACAAAAUGCACAGUGGCAUGGAAAUUUCGCAGAUGCUGGGUUGGAAUUUUCCUGGUGGGGGUAAUUGAUG
.(((((((........(((((((((......((((......))))(((((((((((((...)))...))))))))))..))))))))).))))))) (-25.50 = -25.74 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:22 2006