Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,794,391 – 10,794,487 |
Length | 96 |
Max. P | 0.563294 |
Location | 10,794,391 – 10,794,487 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 78.88 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -9.58 |
Energy contribution | -10.86 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.38 |
Mean z-score | -1.97 |
Structure conservation index | 0.41 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.563294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10794391 96 - 23771897 UUAUAAAAAAUCAGUAUGUCUCCGCCAUGAGUUACUUGAACAGCUUAAAAUAGCAAACCAAAA-GUGGAAACACCGGGG----GGGGCGUGGAAAACAUUG ..............(((((((((.((.((((((........))))))................-(((....))).)).)----)))))))).......... ( -25.50) >DroSec_CAF1 3667 96 - 1 UUAUAAAAAAGCAGUACGUCUCCGCCAUGAGAUACUCAAAGAGCUUAAAAUAGCAAACCAAAAGGUGGAAACACCGGG-----GGGGCGUGGAAAACAUUG ..............(((((((((.((.((((...))))....(((......))).........((((....)))))))-----)))))))).......... ( -30.40) >DroSim_CAF1 5319 96 - 1 UUAUAAAAAAGCAGUGUGUCUCCGCCAUGAUUUACUCAAAGAGCCUUAAAUAGCAAACCAAAAGGUGGAAACAUCGGG-----GGGGCGUGAAAAACAUUG ...........((((((...((((((................((........))...((....((((....))))...-----)))))).))...)))))) ( -24.50) >DroEre_CAF1 5311 101 - 1 UUAUAAAAAAGCAGUACGUCUUUGCCGUGAGUUACUUAACGAACCUAAAAUAGCAAGCCAAAAAGUGGGAACGCCGAGGGGUGGGGGCGUGGAAAGCAUUG ..........((..((((((((..((((..(((....)))..)).............((.....(((....)))...))))..))))))))....)).... ( -23.10) >DroYak_CAF1 3779 79 - 1 UUACAAAAAAGCAGUACGUCUUCGGCAUGAGUUACUUAAAGAGCUUAAAAUGGCAAACCAAAAAGUGGAAACACCGGGG---------------------- ..........((.....(.(....)).((((((........)))))).....))...((.....(((....)))..)).---------------------- ( -12.90) >consensus UUAUAAAAAAGCAGUACGUCUCCGCCAUGAGUUACUUAAAGAGCUUAAAAUAGCAAACCAAAAAGUGGAAACACCGGGG____GGGGCGUGGAAAACAUUG ..................(((.((((........(((.....(((......)))..........(((....))).))).......)))).)))........ ( -9.58 = -10.86 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:19 2006