Locus 3728

Sequence ID 3L_DroMel_CAF1
Location 10,794,169 – 10,794,288
Length 119
Max. P 0.608603
window5822

overview

Window 2

Location 10,794,169 – 10,794,288
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 97.65
Mean single sequence MFE -26.79
Consensus MFE -22.10
Energy contribution -21.98
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.68
Structure conservation index 0.82
SVM decision value 0.15
SVM RNA-class probability 0.608603
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10794169 119 - 23771897
UAAAUUGUCUAUUAGUCAGUGGAGAAAACGAGAGAGAAAUUGCUGCACAUUUUUAUUAUGUGUUCUUUUGCUUUCCGUUUUUGUUUUUCGUCUAAGGGAUGAAAUUUAAUUAAGAUACU
.....(((((.............(((((((.(((((........((((((.......)))))).......))))))))))))...(((((((.....)))))))........))))).. ( -26.46)
>DroSec_CAF1 3446 119 - 1
UAAAUUGUCUAUUAGUCAGUGGAGAAAACGAGAGAGAAAUUGCUGCACAUUUUUAUUAUGUGUUCUUUUGCCUUUCGUUUUAGUUUUUCGGCUAAGGGAUGAAAUUUAAUUAAGAUACU
....(..(((.((((((((..(..((((((((((.((((.....((((((.......))))))..))))..))))))))))..)..)).)))))).)))..)................. ( -27.80)
>DroSim_CAF1 5098 119 - 1
UAAAUUGUCUAUUAGUCAGUGGAGAAAACGAGAGAGAAAUUGCUGCACAUUUUUAUUAUGUGUUCUUUUGCUUUCCGUUUUUGUUUUUCGGCUAAGGGAUGAAAUUUAAUUAAGAUACU
....(..(((.((((((......(((((((.(((((........((((((.......)))))).......)))))))))))).......)))))).)))..)................. ( -28.38)
>DroEre_CAF1 5090 119 - 1
UAAAUUGUCUAUUAGUCAGUGGAGUAAACGAGAGAGAAAUUGCUGCACAUUUUUAUUAUGUGCUCUUUUGCUUUCCGUUUUUGUUUUUCGUCUAAGGGAUGAAAUUUAAUUAAGAUACU
.....(((((...............(((((.(((((........((((((.......)))))).......))))))))))(((..(((((((.....)))))))..)))...))))).. ( -26.46)
>DroYak_CAF1 3564 119 - 1
UAAAUUGUCUAUUAGUCAGUGGAGUAAACGAGAGAGAAAUUGCUGCACAUUUUUAUUAUGUGUUCUUUUGCUUUCCGUUUUUGUUUUUCGUCUAAGGGAUGAAAUUUAAUUAAGAUACU
.....(((((...............(((((.(((((........((((((.......)))))).......))))))))))(((..(((((((.....)))))))..)))...))))).. ( -24.86)
>consensus
UAAAUUGUCUAUUAGUCAGUGGAGAAAACGAGAGAGAAAUUGCUGCACAUUUUUAUUAUGUGUUCUUUUGCUUUCCGUUUUUGUUUUUCGUCUAAGGGAUGAAAUUUAAUUAAGAUACU
....(..(((.((((...(..(((.(((((.(((((........((((((.......)))))).......))))))))))...)))..)..)))).)))..)................. (-22.10 = -21.98 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:18 2006