Locus 3727

Sequence ID 3L_DroMel_CAF1
Location 10,793,719 – 10,793,824
Length 105
Max. P 0.996570
window5821

overview

Window 1

Location 10,793,719 – 10,793,824
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 98.10
Mean single sequence MFE -28.06
Consensus MFE -26.88
Energy contribution -26.92
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -2.00
Structure conservation index 0.96
SVM decision value 2.72
SVM RNA-class probability 0.996570
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10793719 105 - 23771897
UUUUAUUGGGGGAGAUUUGUGUUCGGCACAGGCCACUUGUGUGUUUCCUUCGAUAAUGAAAUUACUUAUCUAUGUCAUCUAUGCUGAUUUGGGUGUAGAAACAUU
..(((((((((((((((((((.....)))))).(((....))))))))))))))))...............((((..((((((((......)))))))).)))). ( -27.70)
>DroSec_CAF1 2998 105 - 1
UUUUAUUGGGGGAGAUUUGUGUUCGGCACAGGCCACUUGUGUGUUUCCUUCGAUAAUGAAAUUACUUAUCUAUGUCAUCUAUGCUGAUUUUGGUGAAGAAACAUU
..(((((((((((((((((((.....)))))).(((....)))))))))))))))).........(((((...((((.......))))...)))))......... ( -24.30)
>DroSim_CAF1 4650 105 - 1
UUUUAUUGGGGGAGAUUUGUGUUCGGCACAGGCCACUUGUGUGUUUCCUUCGAUAAUGAAAUUACUUAUCUAUGUCAUCUAUGCUGAUUUGGGUGUAGAAACAUU
..(((((((((((((((((((.....)))))).(((....))))))))))))))))...............((((..((((((((......)))))))).)))). ( -27.70)
>DroEre_CAF1 4624 105 - 1
UUUUAUUGGGGGAGAUUUGUGUUCGGCACAGGCCACUUGUGUGUUUCCUUCGAUAAUGAAAUUACUUAUCUAUGUCAUCUAUGCUGAUUUGGGUGUAGAGGCAUU
..(((((((((((((((((((.....)))))).(((....))))))))))))))))...............(((((.((((((((......))))))))))))). ( -31.40)
>DroYak_CAF1 3093 105 - 1
UUUUAUUGGGGGAGAUUUGUGUUUGGCACAGGCCACUUGUGUGUUUCCUUCGAUAAUGAAAUUACUUAUCUAUGUCAUCUAUGCUGAUUUGGGUGUAGAAACAUU
..((((((((((((((.(..(..((((....))))..)..).))))))))))))))...............((((..((((((((......)))))))).)))). ( -29.20)
>consensus
UUUUAUUGGGGGAGAUUUGUGUUCGGCACAGGCCACUUGUGUGUUUCCUUCGAUAAUGAAAUUACUUAUCUAUGUCAUCUAUGCUGAUUUGGGUGUAGAAACAUU
..(((((((((((((((((((.....)))))).(((....))))))))))))))))...............((((..((((((((......)))))))).)))). (-26.88 = -26.92 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:17 2006