Locus 3726

Sequence ID 3L_DroMel_CAF1
Location 10,793,141 – 10,793,247
Length 106
Max. P 0.800169
window5820

overview

Window 0

Location 10,793,141 – 10,793,247
Length 106
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -30.88
Consensus MFE -25.00
Energy contribution -25.16
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.65
Structure conservation index 0.81
SVM decision value 0.61
SVM RNA-class probability 0.800169
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10793141 106 - 23771897
GAUAUGGGGUAAUGGAGAAAGGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUACUUUCCUCUUGCCCGUCGCCAAACCCAAA-----
....(((((..((((.((.((((((((.(((.((.....))....((((((((....)))))))).......))).)))))))).))..))))..)....))))..----- ( -33.40)
>DroSec_CAF1 2427 106 - 1
GAUAUGGGGUAAUAGAGAAUGGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUGCUUCCUUCUUGCCCGUCUCCAAACCCAAA-----
....(((((.....(((((.((((.((((......))))(((((.((((((((....))))))))........))))))))))))))......)))))........----- ( -29.40)
>DroSim_CAF1 4073 106 - 1
GAUAUGGGGUAAUGGAGAAAGGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUGCUUCCUUCUUGCCCGUCGCCAAACCCAAA-----
....(((((..((((((((.((((.((((......))))(((((.((((((((....))))))))........)))))))))))))...))))..)....))))..----- ( -30.10)
>DroEre_CAF1 4065 111 - 1
GAUAUGGGGUAAUGGAGAAAGGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUGCUUCCUUCUUGCUCGUCGCCAAACCCAGAACCCA
......((((..(((((((.((((.((((......))))(((((.((((((((....))))))))........))))))))))))).((.....)).....)))..)))). ( -31.70)
>DroYak_CAF1 2453 111 - 1
GAUAUGGGGUAAUGGAGAAAGGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCGCAAAGUUGCUUCCUACUUGCUCGUCGCCAAACCCAAAACACA
....((((....(((.((..(((..((((......))))......((((((((....)))))))))))((((.((........))))))...)).)))..))))....... ( -29.80)
>consensus
GAUAUGGGGUAAUGGAGAAAGGAAAGUCACUCGCAUGACGCAAUCUGGCAAUUAUCUGGUUGCCAUCCUCAAAGUUGCUUCCUUCUUGCCCGUCGCCAAACCCAAA_____
....((((....(((.((..((...((((......))))(((((.((((((((....))))))))........)))))..........))..)).)))..))))....... (-25.00 = -25.16 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:16 2006