Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,792,196 – 10,792,312 |
Length | 116 |
Max. P | 0.959695 |
Location | 10,792,196 – 10,792,312 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 95.86 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -29.38 |
Energy contribution | -29.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.42 |
Structure conservation index | 0.97 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959695 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10792196 116 + 23771897 AUCCAACCCCACUUGUUUGGACUGCCGGCGAAUGUUCGUUCGUGGUUUGCUCUGUGUGCGUUCAUUGAAUUAUUUCAAGCAUGCCGAGCAUUUAUUAGCACUGAAACAAAAAAUCC ............((((((.(..((((.((((((....)))))).)..(((((.((((((.....(((((....))))))))))).))))).......))).).))))))....... ( -29.40) >DroSec_CAF1 1497 115 + 1 -UCCAACCCUACUUGUUUGGACUGCCGGCGAAUGUUCGUUCGUGGUUCGCUCUGUGUGCGUUCAUUGAAUUAUUUCAAGCAUGCCGAGCAUUUAUUAGCACUGAAACAAAAAAUCC -...........((((((((((..(..((((....))))..)..))))((((.((((((.....(((((....))))))))))).))))..............))))))....... ( -32.00) >DroSim_CAF1 3150 116 + 1 AUCCAACCCCACUUGUUUGGACUGCCGGCGAAUGUUCGUUCGUGGUUCGCUCUGUGUGCGUUCAUUGAAUUAUUUCAAGCAUGCCGAGCAUUUAUUAGCACUGAAACAAAAAAUCC ............((((((((((..(..((((....))))..)..))))((((.((((((.....(((((....))))))))))).))))..............))))))....... ( -32.00) >DroEre_CAF1 3146 114 + 1 AUCCAACCCCACUUGUUUGGACUGCCGGCGAAUGUUCGUUCGUGGUUCGCUCUGU--GUGUUCAUUGAAUUAUUUCAAGCAUGCCGAGCACUUAUUAGCACUGAAACAAAAAAUAU ............((((((((((..(..((((....))))..)..))))((((.((--((((...(((((....))))))))))).))))..............))))))....... ( -31.40) >DroYak_CAF1 1604 116 + 1 AUCCAACCCCACUUGUUUGGCCUGCCGGCGAAUGUUCGUUCGUGGUUCGCUCUGUGUGUGUUCAUUGAAUUAUUUCAAGCAUGCCGAGCACUUAUUAGCACUGAAACAAAAAAUAU ............((((((.(..((((.((((((....)))))).)...((((.((((((.....(((((....))))))))))).))))........))).).))))))....... ( -27.30) >consensus AUCCAACCCCACUUGUUUGGACUGCCGGCGAAUGUUCGUUCGUGGUUCGCUCUGUGUGCGUUCAUUGAAUUAUUUCAAGCAUGCCGAGCAUUUAUUAGCACUGAAACAAAAAAUCC ............((((((((((..(..((((....))))..)..))))((((.((((((.....(((((....))))))))))).))))..............))))))....... (-29.38 = -29.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:15 2006