Locus 3723

Sequence ID 3L_DroMel_CAF1
Location 10,790,651 – 10,790,764
Length 113
Max. P 0.719738
window5816

overview

Window 6

Location 10,790,651 – 10,790,764
Length 113
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 81.87
Mean single sequence MFE -41.37
Consensus MFE -25.99
Energy contribution -27.67
Covariance contribution 1.67
Combinations/Pair 1.10
Mean z-score -2.15
Structure conservation index 0.63
SVM decision value 0.40
SVM RNA-class probability 0.719738
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10790651 113 - 23771897
---UGGCUCCUCGAUUCGGUUACGGAUUUCGAUUGGAAUUCCGGAUUCCGUCCGGAUUACGAAUUCCGUAUCGCUGG----AUGGCCCGCCGAGUUGCGGUUGAUUAGGUGUUAUCGUUA
---((((.(((.((((((....))))))(((((((.(((((.((...((((((((..((((.....))))...))))----))))....))))))).)))))))..))).))))...... ( -40.50)
>DroYak_CAF1 143715 120 - 1
UGGUGGCGCCUCGAUUCGGUUACGGAUUUCGAUUGGAAUUCCGGAUUCCGUCCGGAUUACGAAUUCCGUAUCGCUGGAUGGAUGGCCCGCCGAGUUGCGGUUGAUUAGGUGUUAUCGUUA
.((((((((((.((((((....))))))(((((((.((((((((..(((((((((..((((.....))))...)))))))))....)))..))))).)))))))..)))))))))).... ( -50.60)
>DroAna_CAF1 125645 103 - 1
---CGUCUCCUGAAUUCGUUUACGGAUUCCGAUUGGGAUUCCGGAAU----CUGGAUUCGAAA------AUCGCUGG----AUGGGCCGCCGAGCUGCGGUUGAUUAGGUGUUAUCGUUA
---........(((((((....((((.(((.....))).))))....----.)))))))((.(------(.((((.(----((.((((((......)))))).))).)))))).)).... ( -33.00)
>consensus
___UGGCUCCUCGAUUCGGUUACGGAUUUCGAUUGGAAUUCCGGAUUCCGUCCGGAUUACGAAUUCCGUAUCGCUGG____AUGGCCCGCCGAGUUGCGGUUGAUUAGGUGUUAUCGUUA
....(((.(((.((((.(((((((((.(((.....))).))))...(((((((((..((((.....))))...)))))))))))))).((((.....)))).))))))).)))....... (-25.99 = -27.67 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:12 2006