| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,788,843 – 10,788,959 |
| Length | 116 |
| Max. P | 0.808921 |
| Location | 10,788,843 – 10,788,959 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.36 |
| Mean single sequence MFE | -32.72 |
| Consensus MFE | -28.08 |
| Energy contribution | -28.22 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.808921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10788843 116 - 23771897 A-AGCGAGGGUAAUGGUUACGGUAUUGGCUUACUUUUUACUGGGUGGCCGAUGGGGCGUAUGAUUUAUUUUUAUGUUAUUCAUUUAUU-UUUAUGCCUUGUCUCUCGC--UGCCGCGCGC .-(((((((.....((((((((((..((....))...))))..))))))((..(((((((.((..((.....(((.....))).))..-)))))))))..))))))))--)......... ( -32.20) >DroSec_CAF1 123217 114 - 1 A-AGCGAGGGUAAUGGUUACGGUAUUGCCUUACUUUUUACUGGGUGGCCGAUGGGGCGUAUGAUUUAUUUUUAUGUUAUUCAUUUAUU-UUUAUGCCUUGUCUCUCGC--UGCCG--CGC .-(((((((.....((((((((.....))...((.......))))))))((..(((((((.((..((.....(((.....))).))..-)))))))))..))))))))--)....--... ( -31.90) >DroSim_CAF1 126063 114 - 1 A-AGCGAGGGUAAUGGUUACGGUAUUGGCUUACUUUUUACUGGGUGGCCGAUGGGGCGUAUGAUUUAUUUUUAUGUUAUUCAUUUAUU-UUUAUGCCUUGUCUCUCGC--UGCCG--CGC .-(((((((.....((((((((((..((....))...))))..))))))((..(((((((.((..((.....(((.....))).))..-)))))))))..))))))))--)....--... ( -32.20) >DroEre_CAF1 128638 116 - 1 A-AGCGAGGGUAAUGGUUACGGUAUUGGCUUACUUUUUACAGGGUGGCCGAUGGGGCGUAUGAUUUAUUUUUAUGUUAUUCAUUUAUU-UUUAUGCCUUGUCUCUCGCGCUGCCU--UGC .-.(((((((((..(((((......))))))))......(((.((((..((..(((((((.((..((.....(((.....))).))..-)))))))))..))..)))).))))))--))) ( -32.50) >DroYak_CAF1 141758 116 - 1 A-AGCGAGGGUAAUGGUUACAGUAUUGGCUUACUUUUUACUGGGUGGCCGAUGGGGCGUAUGAUUUAUUUUUAUGUUAUUCAUUUAUU-UUUAUGCCUUGUCUCUCGCGGUGCUU--UGC .-.((((((.....((((((((((..((....))...))))..))))))((..(((((((.((..((.....(((.....))).))..-)))))))))..)))))))).......--... ( -31.50) >DroAna_CAF1 123711 116 - 1 CAGGCGCGGGUAAUGGCUACGGUAUUGGCUCACUUUUUACUGGGUGGCCGAUGGGGCGUAUGAUUUAUUUUUAUGUUAUUCAUUUAUUUUUUAUGCGUUGUCUCGCUC--UGCCC--CGC ...(((.(((((..(((.....(((((((.(((((......)))))))))))).(((((((((...((....(((.....)))..))...))))))))).....))).--)))))--))) ( -36.00) >consensus A_AGCGAGGGUAAUGGUUACGGUAUUGGCUUACUUUUUACUGGGUGGCCGAUGGGGCGUAUGAUUUAUUUUUAUGUUAUUCAUUUAUU_UUUAUGCCUUGUCUCUCGC__UGCCG__CGC ...((((((.....((((((((((..((....))...))))..))))))((..(((((((.....((.....(((.....))).)).....)))))))..))))))))............ (-28.08 = -28.22 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:11 2006