Locus 3721

Sequence ID 3L_DroMel_CAF1
Location 10,785,946 – 10,786,040
Length 94
Max. P 0.738407
window5814

overview

Window 4

Location 10,785,946 – 10,786,040
Length 94
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 85.86
Mean single sequence MFE -19.32
Consensus MFE -14.51
Energy contribution -15.01
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.75
SVM decision value 0.44
SVM RNA-class probability 0.738407
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10785946 94 + 23771897
ACUGGGCGCUCAGCAAAGAGCAGCAAGUGAAUGCCAUACGGGGAAAAACAUACACACACACACACAAAUUCCUUUUCCAUUUUCACCAC--CUUUU-----
...((((((((......)))).))..(((((..((....))((((((.........................))))))...)))))..)--)....----- ( -17.51)
>DroSec_CAF1 120376 92 + 1
ACUGGGCGCUCAGCAAAGAGCAGCAAGUGAAAGCCAUACGGGGAAAA-U----AUACACACAUACAAAUUCCUUUUCCAUUUUCACCAC--CCUUUUCC--
...(((.((((......)))).....(((((((((....))((((((-.----...................)))))).)))))))..)--))......-- ( -19.75)
>DroSim_CAF1 123161 92 + 1
ACUGGGCGCUCAGCAAAGAGCAGCAAGUGAAAGCCAUACGGGGAAAA-C----AUACACACACACAAAUUCCUUUUCCAUUUUCACCAC--CUUUUCCC--
...((((((((......)))).))..(((((((((....))((((((-.----...................)))))).)))))))..)--).......-- ( -18.95)
>DroEre_CAF1 125523 100 + 1
ACUGGGCGCUCAGCAAGGAGCAGCACGUGAAAGCCACACGGUGAAAA-CAUGCACACACACACACAAAUUGCUUUUCCAUUUUCACCCUCUCUUUCUCCCA
...(((.((((......)))).......(((((......((((((((-...(((...............))).......))))))))....))))).))). ( -21.06)
>consensus
ACUGGGCGCUCAGCAAAGAGCAGCAAGUGAAAGCCAUACGGGGAAAA_C____ACACACACACACAAAUUCCUUUUCCAUUUUCACCAC__CUUUUUCC__
.....((((((......)))).))..(((((((((....))((((((.........................)))))).)))))))............... (-14.51 = -15.01 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:10 2006