Locus 3720

Sequence ID 3L_DroMel_CAF1
Location 10,785,111 – 10,785,204
Length 93
Max. P 0.979147
window5813

overview

Window 3

Location 10,785,111 – 10,785,204
Length 93
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.85
Mean single sequence MFE -16.48
Consensus MFE -15.00
Energy contribution -15.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.23
Structure conservation index 0.91
SVM decision value 1.83
SVM RNA-class probability 0.979147
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10785111 93 - 23771897
CCCCAGGGGCCUUCAACCCUAUGCUGAG---UACCAUACCAAUG------------------------CCUUCUACCCUUCAGGCCACAUUUGGCCCACCUCAAUUCAAUUUAACUUUCA
....((((........))))....((((---...(((....)))------------------------..............(((((....)))))...))))................. ( -15.80)
>DroSim_CAF1 122320 93 - 1
CCCCAGGGGCCUUCAACCCUAUGCUGAG---UACCAUACCAAUG------------------------CCUUCUACCCUUCAGGCCACAUUUGGCCCACCUCAAUUCAAUUUAACUUUCA
....((((........))))....((((---...(((....)))------------------------..............(((((....)))))...))))................. ( -15.80)
>DroEre_CAF1 124668 93 - 1
CCCCAGGGGCCUUCAACCCUAUGCUGAG---UACCAUACCAAUG------------------------CCUUCUACCCUUCAGGCCACAUUUGGCCCACCUCAAUUCAAUUUAACUUUCA
....((((........))))....((((---...(((....)))------------------------..............(((((....)))))...))))................. ( -15.80)
>DroYak_CAF1 137642 120 - 1
CCCCAGGGGCCUUCAACCCUAUGCUGAGUAGUACCAUACCCAUGCCUUCUACCGUUCUACCAUUCUGCCCUUCUACCCUUCAGGCCACAUUUGGCCCACCUCAAUUCAAUUUAACUUUCA
....((((((............((.(.((((...(((....)))....)))))))...........))))))..........(((((....)))))........................ ( -18.50)
>consensus
CCCCAGGGGCCUUCAACCCUAUGCUGAG___UACCAUACCAAUG________________________CCUUCUACCCUUCAGGCCACAUUUGGCCCACCUCAAUUCAAUUUAACUUUCA
....((((........))))....((((......(((....)))......................................(((((....)))))...))))................. (-15.00 = -15.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:09 2006