Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,077,707 – 1,077,797 |
Length | 90 |
Max. P | 0.746902 |
Location | 1,077,707 – 1,077,797 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 75.54 |
Mean single sequence MFE | -14.61 |
Consensus MFE | -8.47 |
Energy contribution | -8.34 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.18 |
Mean z-score | -1.87 |
Structure conservation index | 0.58 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1077707 90 + 23771897 UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGU--UGGUCUCUUCCAUCACUCAUGCACUUACAAUUC---C------C-CAACCAUUCUUUCGCUUUCCUUUU ..(((((((......((....))......((--(((..............................---.------)-)))).......)))))))...... ( -11.08) >DroEre_CAF1 58982 97 + 1 UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGA--UGGUCUGCUCCAUCACUCAUGCACUUACAACUC---CUUGCGCCCUAACCAUUUUCCCUUUGCUCUUUG (((.((((.......((....))......((--(((......)))))...................---....)))))))...................... ( -16.40) >DroYak_CAF1 54211 97 + 1 UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGA--UGGUCUGCUCCAUCACUCAUGCACUUACAACUC---CUUGCUCCCCAACCAUUUUCCCCCUCCUCCUUG ..((((((......))).)))((......((--(((......)))))......))...........---................................. ( -14.20) >DroAna_CAF1 51984 90 + 1 UAGAGGCGAUCUCCCGUUCUCGCUAAUUCGAGAAGGUCUCCUCCAUCAUUCAUGCACUUACACCUCAUCCUUGCACUCCAC------UCU------CUUUUC ..((((.(((((.....(((((......)))))))))).)))).........((((...............))))......------...------...... ( -16.76) >consensus UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGA__UGGUCUCCUCCAUCACUCAUGCACUUACAACUC___CUUGC_CCCCAACCAUUUUCCC_CU_CCCUUUG ..((((((......))).)))((..........(((......)))........))............................................... ( -8.47 = -8.34 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:17 2006