Locus 372

Sequence ID 3L_DroMel_CAF1
Location 1,077,707 – 1,077,797
Length 90
Max. P 0.746902
window546

overview

Window 6

Location 1,077,707 – 1,077,797
Length 90
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 75.54
Mean single sequence MFE -14.61
Consensus MFE -8.47
Energy contribution -8.34
Covariance contribution -0.13
Combinations/Pair 1.18
Mean z-score -1.87
Structure conservation index 0.58
SVM decision value 0.46
SVM RNA-class probability 0.746902
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1077707 90 + 23771897
UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGU--UGGUCUCUUCCAUCACUCAUGCACUUACAAUUC---C------C-CAACCAUUCUUUCGCUUUCCUUUU
..(((((((......((....))......((--(((..............................---.------)-)))).......)))))))...... ( -11.08)
>DroEre_CAF1 58982 97 + 1
UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGA--UGGUCUGCUCCAUCACUCAUGCACUUACAACUC---CUUGCGCCCUAACCAUUUUCCCUUUGCUCUUUG
(((.((((.......((....))......((--(((......)))))...................---....)))))))...................... ( -16.40)
>DroYak_CAF1 54211 97 + 1
UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGA--UGGUCUGCUCCAUCACUCAUGCACUUACAACUC---CUUGCUCCCCAACCAUUUUCCCCCUCCUCCUUG
..((((((......))).)))((......((--(((......)))))......))...........---................................. ( -14.20)
>DroAna_CAF1 51984 90 + 1
UAGAGGCGAUCUCCCGUUCUCGCUAAUUCGAGAAGGUCUCCUCCAUCAUUCAUGCACUUACACCUCAUCCUUGCACUCCAC------UCU------CUUUUC
..((((.(((((.....(((((......)))))))))).)))).........((((...............))))......------...------...... ( -16.76)
>consensus
UAGAGGCGAUCUCCUGCUCUCGCUAAUUCGA__UGGUCUCCUCCAUCACUCAUGCACUUACAACUC___CUUGC_CCCCAACCAUUUUCCC_CU_CCCUUUG
..((((((......))).)))((..........(((......)))........))............................................... ( -8.47 =  -8.34 +  -0.13) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:17 2006