| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,784,301 – 10,784,406 |
| Length | 105 |
| Max. P | 0.884836 |
| Location | 10,784,301 – 10,784,406 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.26 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -26.40 |
| Energy contribution | -25.98 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.884836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10784301 105 + 23771897 CCCCUAAGACUUUAUCCGCUAAACGAUUUUCUUGGGAUCCUCUUU-GUGCCGAGGUGCUCGGCUUGGGCACUUGCUCUCAAGCACAUCCCACAU-------C-------CACCAUCCGGC ..(((((((....(((........)))..))))))).........-..((((.((((...((..((((....((((....))))...))))...-------)-------)..)))))))) ( -27.40) >DroSec_CAF1 118781 105 + 1 CCCCUAAGACUUUAUCCGCUAAACGAUUUUCUUGGGAUCCUCUUU-GUGCCGAGGUGCUCGGCUUGGGCACUUGCUCUCAAGCACAUCCCACAU-------C-------CACCAUCCGGC ..(((((((....(((........)))..))))))).........-..((((.((((...((..((((....((((....))))...))))...-------)-------)..)))))))) ( -27.40) >DroSim_CAF1 121572 105 + 1 CCCCUAAGACUUUAUCCGCUAAACGAUUUUCUUGGGAUCCUCUUU-GUGCCGAGGUGCUCGGCUUGGGCACUUGCUCUCAAGCACAUCCCACAU-------C-------CACCAUUCGGC ..(((((((....(((........)))..))))))).........-..(((((((((...((..((((....((((....))))...))))..)-------)-------))))..))))) ( -27.70) >DroEre_CAF1 123855 105 + 1 CCCCUAAGACUUUAUCCGCUAAACGAUUUUCUUGGGAUCCUCUUU-GUGCCGAGGUGCUCGGCAUGGGCACUUGCUCUCGAGCACAUCCCACAA-------CUCAC-------AUCCGGC (((((((((....(((........)))..))))))).......((-(((..((.((((((((...((((....)))))))))))).)).)))))-------.....-------....)). ( -30.40) >DroYak_CAF1 136794 120 + 1 CCCCUAAGACUUUAUCCGCUAAACGAUUUUCUUGGGAUCCUCUUUCGUGCCGAGGUGCUCGGCUUGGGCACUUGCUCUCGAGCACAUCCCACCUCCCACGUCUCACAUCCACCAUCCGGC (((((((((....(((........)))..))))))).........((((..((((((....((((((((....)).).)))))......)))))).)))).................)). ( -29.90) >DroAna_CAF1 118586 104 + 1 CCCUCAAGACUUUAUCCGCUAAACGAUUUUCUUGGGAUCCUCUUU-GUGUCGAGGUGCUCGGCACGGGCACUUGCUCUCAAGCACAUUCCACC--------C-------GACCACCCGGC ..(((((((....(((........)))..))))))).........-..((((.((((.((((...(((....((((....))))...)))..)--------)-------)).)))))))) ( -28.70) >consensus CCCCUAAGACUUUAUCCGCUAAACGAUUUUCUUGGGAUCCUCUUU_GUGCCGAGGUGCUCGGCUUGGGCACUUGCUCUCAAGCACAUCCCACAU_______C_______CACCAUCCGGC ..(((((((....(((........)))..)))))))............((((((((((((.....))))))))(((....))).................................)))) (-26.40 = -25.98 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:08 2006