Locus 3718

Sequence ID 3L_DroMel_CAF1
Location 10,783,148 – 10,783,251
Length 103
Max. P 0.792108
window5811

overview

Window 1

Location 10,783,148 – 10,783,251
Length 103
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 80.02
Mean single sequence MFE -26.22
Consensus MFE -16.86
Energy contribution -17.70
Covariance contribution 0.84
Combinations/Pair 1.05
Mean z-score -1.90
Structure conservation index 0.64
SVM decision value 0.59
SVM RNA-class probability 0.792108
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10783148 103 - 23771897
-----AACCCUCCUCCAAACAGAAA--CGCAGGCAAAUGUUGGUGUGAUCUGUUUGUGGCAUGGGUCACAAAUAUAUAUACACAAAAAAAAAA--AA---AUAGAGUGGGUGAUG
-----.((((..(((.(((((((.(--(((..((....))..))))..)))))))(((((....)))))........................--..---...))).)))).... ( -27.70)
>DroSec_CAF1 116881 94 - 1
-----AACCCUCCUCCAAACAGAAA--CGCAGGCAAAUGUUGGUGUGAUCUGUUUGUGGCAUGGGUCACGAAUAUUC---------AAGAAAA--AA---AUAGAGUGGGUGAUG
-----.((((..(((.(((((((.(--(((..((....))..))))..)))))))(((((....)))))........---------.......--..---...))).)))).... ( -27.70)
>DroSim_CAF1 119794 94 - 1
-----AACCCUCCUCCAACCAGAAA--CGCAGGCAAAUGUUGGUGUGAUCUGUUUGUGGCAUGGGUCACGAAUAUUC---------AAGAAAA--AA---AUAGAGUGGGUGAUG
-----.((((..(((....((((.(--(((..((....))..))))..))))((((((((....)))))))).....---------.......--..---...))).)))).... ( -26.30)
>DroEre_CAF1 122871 94 - 1
-----AACCCUCCU-------GUUUUGCGCAGGGAAAUGUUGGUGUGAUCUGUUUCUGGCAUGGGUCACGAAUAUUC---------AAAAAAAUAUAUAUAUAGAGUGGGUGAUG
-----.((((((((-------((.....)))))).((((((..((((((((((.......)))))))))))))))).---------.....................)))).... ( -22.10)
>DroYak_CAF1 135783 94 - 1
CCUCUAACCCUCCU-------GAAU--CGCAUGGAAAUGUUGGUGUGAUCUGUUUGUGGCAGGGGUCACGAAUAUUC---------AAACACAAAAAU---UGGAGUGGGUGAUG
..((...((((((.-------....--.((((....))))..((((....((((((((((....))))))))))...---------..))))......---.)))).))..)).. ( -27.30)
>consensus
_____AACCCUCCUCCAA_CAGAAA__CGCAGGCAAAUGUUGGUGUGAUCUGUUUGUGGCAUGGGUCACGAAUAUUC_________AAAAAAA__AA___AUAGAGUGGGUGAUG
......((((..(((............(((..((....))..))).....((((((((((....)))))))))).............................))).)))).... (-16.86 = -17.70 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:07 2006