| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,781,317 – 10,781,425 |
| Length | 108 |
| Max. P | 0.888700 |
| Location | 10,781,317 – 10,781,425 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 87.96 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -20.13 |
| Energy contribution | -20.37 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888700 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10781317 108 - 23771897 UUGAGUAUGGUAUGUAUAUAUGCGGAGUGAGUAUGGAGUUUUAAAACGCAAGUUUCAAACGCAAGCCUUGAAAUAUUCAAAUGUGUCAAAGUUUGCAUUUAAGAAAUA ((((((...((.((...((.((((...((((........))))...)))).))..)).))((((((.((((.((((....)))).)))).))))))))))))...... ( -21.90) >DroSec_CAF1 115057 108 - 1 UUGAGUAAGGUAUGUAUAUAAGCGGAGUGAGUAUGGAGCUUAUAAACGCAAGUUUAAAACGUAAACUUUGACAUAUUCGAAUAUGUCAAAGUUUGUGUUUAAAAAAUA ..................(((((...((....))...)))))(((((....)))))((((((((((((((((((((....))))))))))))))))))))........ ( -29.60) >DroSim_CAF1 117968 108 - 1 UUGAGUAAGGUAUGUAUAUAAGCGGAGUGAGUAUGGAGCUUAUAAAUGCAAGUUUUAAACGUAGACUUUGAAAUAUUCGAAUAUGUCAAAGUUUGUGUUAACAAAAUA (((..(((((..(((((((((((...((....))...)))))))..))))..)))))((((((((((((((.((((....)))).))))))))))))))..))).... ( -23.90) >consensus UUGAGUAAGGUAUGUAUAUAAGCGGAGUGAGUAUGGAGCUUAUAAACGCAAGUUUAAAACGUAAACUUUGAAAUAUUCGAAUAUGUCAAAGUUUGUGUUUAAAAAAUA .....................(((..((((((.....))))))...)))..((((((((((((((((((((.((((....)))).)))))))))))))))..))))). (-20.13 = -20.37 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:06 2006