Locus 3716

Sequence ID 3L_DroMel_CAF1
Location 10,778,450 – 10,778,551
Length 101
Max. P 0.942779
window5809

overview

Window 9

Location 10,778,450 – 10,778,551
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 97.72
Mean single sequence MFE -39.36
Consensus MFE -37.34
Energy contribution -37.54
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.95
SVM decision value 1.33
SVM RNA-class probability 0.942779
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10778450 101 - 23771897
ACGUCUGGGUCUGGAAGCCCCGACUUUGGCGACAGCCAACCGAUCCGCUGUUGGUAAUGGUGACUCUGGUUCUGGUACGGUGUCGUCGACCAGACGAAAUC
.((((((((((.((....)).))).((((((((((((((((((..((((((.....))))))..)).)))..))))....))))))))))))))))..... ( -40.20)
>DroSec_CAF1 112041 101 - 1
ACGUCUGGGUCUGGAAGCCCCGACUUUGGCGACAGCCAACCGAUCCGCUGAUGGUAAUGGUGACUCUGGUUCUGCUACGGUGUCGUCGACCAGACGAAAUC
.((((((((((.((....)).))).((((((((.(((((((.(((....))))))..)))).(((.(((.....))).))))))))))))))))))..... ( -38.90)
>DroSim_CAF1 114941 101 - 1
ACGUCUGGGUCUGGAAGCCCCGACUUUGGCGACAGCCAACCGAUCCGCUGAUGGUAAUGGUGACUCUGGUUCUGGUACGGUGUCGUCGACCAGACGAAAUC
.((((((((((.((....)).))).((((((((((((((((((..((((.........))))..)).)))..))))....))))))))))))))))..... ( -38.70)
>DroEre_CAF1 117386 101 - 1
ACGUCUGGGUCUGGAAGCCCCGACUUUGGCGACAGCCAACCGAUCCGCUGGCGGUAAUGGUGACUCUGGUUCUGGUACGGUGUCGUCGACCAGACGAAAUC
.((((((((((.((....)).))).(((((((((((((((((..(((....)))....(....)..))))..))))....))))))))))))))))..... ( -40.30)
>DroYak_CAF1 130507 101 - 1
ACGUCUGGGUCUGGAAGCCCCGACUUUGGCGACAGCCAACCGAUCCGCUGAUGGUAAUGGUGACUCUGGUUCUGGUGCAGUGUCGUCGACCAGACGAAAUC
.((((((((((.((....)).))).((((((((((((((((((..((((.........))))..)).)))..))))....))))))))))))))))..... ( -38.70)
>consensus
ACGUCUGGGUCUGGAAGCCCCGACUUUGGCGACAGCCAACCGAUCCGCUGAUGGUAAUGGUGACUCUGGUUCUGGUACGGUGUCGUCGACCAGACGAAAUC
.((((((((((.((....)).))).((((((((((((((((((..((((.........))))..)).)))..))))....))))))))))))))))..... (-37.34 = -37.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:05 2006