Locus 3714

Sequence ID 3L_DroMel_CAF1
Location 10,776,932 – 10,777,033
Length 101
Max. P 0.509799
window5806

overview

Window 6

Location 10,776,932 – 10,777,033
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.04
Mean single sequence MFE -15.81
Consensus MFE -8.70
Energy contribution -9.03
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.55
SVM decision value -0.05
SVM RNA-class probability 0.509799
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10776932 101 + 23771897
CUCUCCCACUCAAUAGCCAUCAACUUGUUGCCGGCAUUGUAAACAAACAUUU----GGGGCCACAUUCCGACACAAAAAC------------CCCAAAUACA---CACACACACACAGAU
..........((((.(((..(((....)))..))))))).........((((----((((...................)------------)))))))...---............... ( -16.51)
>DroSec_CAF1 110521 97 + 1
CGCUCCCACUCAAUAGCCAUCAACUUGUUGCCGGCAUUGUAAACAAACAUUU----GGGGCCACAUUCCGACACAAAAGC------------CCGAAAUACA---CACACACAC----AU
..........((((.(((..(((....)))..))))))).........((((----.((((.................))------------)).))))...---.........----.. ( -15.53)
>DroSim_CAF1 113505 97 + 1
CGCUCCCACUCAAUAGCCAUCAACUUGUUGCCGGCAUUGUAAACAAACAUUU----GGGGCCACAUUCCGACACAAAAGC------------CCGAAAUACA---CACACACAC----AU
..........((((.(((..(((....)))..))))))).........((((----.((((.................))------------)).))))...---.........----.. ( -15.53)
>DroEre_CAF1 115831 93 + 1
CUCUCCCACUCAAUAGCCAUCAACUUGUUGCCGGCAUUGUAAACAAACAAUUU---GGGGCCACAUUCCUAUACAAAAAC------------C-CAAAUGCA---CA----CAC----AU
..........((((.(((..(((....)))..)))))))..........((((---(((....................)------------)-)))))...---..----...----.. ( -14.45)
>DroYak_CAF1 127239 93 + 1
CUCUCCCACUCAAUAGCCAUCAACUUGUUGCCGGCAUUGUAAACAAACAUUUG---GGGCCCACAUUCCUACACAAAAAC------------C-GAAAUGCA---CA----CAC----AU
..........((((.(((..(((....)))..)))))))........(((((.---((.....................)------------)-.)))))..---..----...----.. ( -12.50)
>DroAna_CAF1 111337 115 + 1
CUCUCCCACUCAAUAGCCAUCAACUUGUUGCCGGCUUUAUAAACAAACAUCUCGCCGAGGCAACAUUCCAUC-CAUCCAUCCAUCGAUCGAUCGGGUAUACGUAGCACACAAAC----AU
...............((........((((((((((..................)))..)))))))....(((-((((.(((....))).))).)))).......))........----.. ( -20.37)
>consensus
CUCUCCCACUCAAUAGCCAUCAACUUGUUGCCGGCAUUGUAAACAAACAUUU____GGGGCCACAUUCCGACACAAAAAC____________CCGAAAUACA___CACACACAC____AU
....(((........(((..(((....)))..))).(((....)))..........)))............................................................. ( -8.70 =  -9.03 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:02 2006