Locus 3713

Sequence ID 3L_DroMel_CAF1
Location 10,776,334 – 10,776,425
Length 91
Max. P 0.705134
window5805

overview

Window 5

Location 10,776,334 – 10,776,425
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -31.37
Consensus MFE -20.19
Energy contribution -20.05
Covariance contribution -0.14
Combinations/Pair 1.20
Mean z-score -1.72
Structure conservation index 0.64
SVM decision value 0.36
SVM RNA-class probability 0.705134
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10776334 91 - 23771897
---------CAAAUCACCCCGCCCU--UCCAGUU---------------UCA--CCCACCCGCUGUGUGGAAA-CUGGCUCCUUGGGGGUGGCUAGACUUUUCCGGCUAGUCAAAAGUGA
---------.......(((((....--.((((((---------------((.--(.(((.....))).)))))-)))).....))))).(((((((.((.....)))))))))....... ( -30.60)
>DroSec_CAF1 109925 91 - 1
---------UAAAUCACCCCGCCCA--UCCACUU---------------CCA--CCCACUCGCUGUGAGGAAA-CUGGCUCCUUGGGGGUGGCUAGACUUUCCCGGCUAGUCAAAAGUGA
---------....((((.((.((((--.(((.((---------------((.--..(((.....))).)))).-.))).....))))))(((((((.((.....)))))))))...)))) ( -25.90)
>DroSim_CAF1 112894 91 - 1
---------CAAAUCACCCCGCCCA--CCCACUU---------------UCA--CCCACCCGCUGUGAGGAAA-CUGGCUCCUUGGGGGUGGCUAGACUUUCCCGGCUAGUCAAAAGUGA
---------................--..(((((---------------(.(--(((.((....((.((....-)).)).....))))))((((((.((.....)))))))).)))))). ( -27.00)
>DroEre_CAF1 115234 95 - 1
---------CAAAUCACCCCGCCCA--CCCACUUGCCA-----------CCA--CCCACCCGCUGUGAGGAAA-CUGGCUCCUUGGGGGUGGCUAGACUUUCCCGGCUAGUCAAAAGUGA
---------................--..(((((((((-----------((.--((((......((.((....-)).))....))))))))))..((((.........))))..))))). ( -32.60)
>DroYak_CAF1 126597 115 - 1
CAAAACACCCAAAUCACCCCGCCCA--CCCACUUGCCACCCACCAAACACCA--CCCACCCGCUGUGAGGAAA-CUGGCUCCUUGGGGGUGGCUAGACUUUGCCGGCUAGUCAAAAGUGA
.........................--..((((((((((((.((((...((.--..(((.....)))((....-))))....)))))))))))..((((..(....).))))..))))). ( -33.00)
>DroAna_CAF1 110735 96 - 1
---------CUUGACACCACCCCCAGUGCCAGUG---------------CCAGUGCCGCCUGCUGGGCGAAAAGUUGGCUACGUGGGGGUGGCUAGACUCUCCCGGCUAGUCAAAAGUGA
---------.(((((.((((((((((((((((.(---------------(....))((((.....)))).....))))).)).))))))))).(((.((.....))))))))))...... ( -39.10)
>consensus
_________CAAAUCACCCCGCCCA__CCCACUU_______________CCA__CCCACCCGCUGUGAGGAAA_CUGGCUCCUUGGGGGUGGCUAGACUUUCCCGGCUAGUCAAAAGUGA
.............((((......................................((((((.(...(((((........)))))).))))))...((((.........))))....)))) (-20.19 = -20.05 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:01 2006