Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,776,193 – 10,776,294 |
Length | 101 |
Max. P | 0.963941 |
Location | 10,776,193 – 10,776,294 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 90.55 |
Mean single sequence MFE | -21.35 |
Consensus MFE | -19.02 |
Energy contribution | -19.30 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.89 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.963941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10776193 101 - 23771897 ACUUCCAUGUCCUUUCUUGGCUGCUCCUUUUUUU------------UCCUUAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG .........((((((((.((..((..........------------......((.((((...)))))).............((((....))))))..)).))))))))..... ( -20.90) >DroSec_CAF1 109784 101 - 1 ACUUUCAUGUCCUUUCUUGGCUGCUCCGUUUUUU------------UCCUCUGCCGAGCUUUGCUUGCAUUUUAUUACUUUCCGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG .((((....((((((((.(((.((((.((.....------------......)).))))...))).((((......((((.......)))))))).....)))))))).)))) ( -20.60) >DroSim_CAF1 112753 101 - 1 ACUUCCAUGUCCUUUCUUGGCUGCUCCUUUUUUU------------UCCUCAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG .(((((.........((((((((...........------------....))))))))........((((......(((((.....)))))))))......)))))....... ( -21.46) >DroEre_CAF1 115081 113 - 1 ACUUUCCUGUCCCUUCUUGGCUGCUCCUUUUUUUUUUUUUUUGCUUUUCUCAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG .((((((((......((((((((...........................))))))))........((((......(((((.....)))))))))....))))))))...... ( -22.73) >DroYak_CAF1 126456 101 - 1 ACUUUCCUGUCCCUUCUUGGCUGCUCCUUUUUUU------------UUCUCAGCCAAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGAAAGGAAAAAG ..((((((.((....((((((((...........------------....))))))))........((((......(((((.....)))))))))......)).))))))... ( -21.06) >consensus ACUUUCAUGUCCUUUCUUGGCUGCUCCUUUUUUU____________UCCUCAGCCGAGCUUUGCUUGCAUUUUAUUACUUAACGCUUAAGUGUGCUUCUUAGGAAGGAAAAAG .........((((((((.((..((............................((.((((...)))))).......((((((.....)))))).))..)).))))))))..... (-19.02 = -19.30 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:00 2006