Locus 371

Sequence ID 3L_DroMel_CAF1
Location 1,072,780 – 1,072,872
Length 92
Max. P 0.537618
window545

overview

Window 5

Location 1,072,780 – 1,072,872
Length 92
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 80.67
Mean single sequence MFE -23.60
Consensus MFE -17.00
Energy contribution -17.17
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.17
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.537618
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1072780 92 - 23771897
--AGUUGCAGUUGCAAUGUUGCAGGGGCGCUGCCUUUGGGCCCGGCCUAAGUAUCUGUAUCUGCGAGUUUAUAUAUCUAUAUACGUACGUAUCU
--..((((((.((((....(((..((((...(((....)))...))))..)))..)))).))))))((.((((....)))).)).......... ( -24.90)
>DroSec_CAF1 47188 76 - 1
--AGUUGCAGUUGCAAUGUUCCAGGGGCGCUGCCUUUGGGCCCGGCCUAAGUAUCUGUA----------------UCUAUACAUGUACGUAUCU
--.(((((....)))))(..((((((((...))))))))..)........((((.((((----------------....)))).))))...... ( -21.80)
>DroSim_CAF1 48937 76 - 1
--AGUUGCAGUUGCAAUGUUGCAGGGGCGCUGCCUUUGGGCCCGGCCUAAGUAUCUGUA----------------UCUAUAUACAAACGUAUCU
--((.(((((.((((....))))(((.((..(((....))).)).)))......)))))----------------.))..((((....)))).. ( -19.30)
>DroEre_CAF1 51381 84 - 1
--AGUUGCAGUUGCAAUGUUGCAGGGGCGCUGCCUUUGGGCCCGGCCUAAGUAUCUGUAUCUGCGAGUC--------UAUAUAUCUAUAUAUCU
--..((((((.((((....(((..((((...(((....)))...))))..)))..)))).))))))...--------................. ( -23.90)
>DroYak_CAF1 49314 78 - 1
--AGUUGCAGUUGCAAUGUUGCAGGGGCGCUGCCUUUGGGCCCGGCCUAAGUAUCUGUAUCUGU--------------GUAUAUCUGUGUAUCU
--....((((.((((....(((((((((...)))(((((((...)))))))..))))))....)--------------)))...))))...... ( -22.00)
>DroAna_CAF1 46763 75 - 1
CAAGUUGCAGUUGCAAUGUUGCUGGGGCCCUGCCUUUGGGCCUGGCCUAAGUAUCUGUAUCUGC------------------AUCUGUGUAUC-
..((.(((((.((((....((((.(((((..(((....)))..))))).))))..)))).))))------------------).)).......- ( -29.70)
>consensus
__AGUUGCAGUUGCAAUGUUGCAGGGGCGCUGCCUUUGGGCCCGGCCUAAGUAUCUGUAUCUGC_____________UAUAUAUCUACGUAUCU
.....(((((.(((.......(((((((...)))))))(((...)))...))).)))))................................... (-17.00 = -17.17 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:16 2006