| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,773,671 – 10,773,903 |
| Length | 232 |
| Max. P | 0.926231 |
| Location | 10,773,671 – 10,773,783 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 93.13 |
| Mean single sequence MFE | -20.16 |
| Consensus MFE | -16.14 |
| Energy contribution | -16.46 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532559 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10773671 112 - 23771897 UGAUAAAUGGUUUCACCAGCUUGGCUUUG-CUGCUUUU---GCAGUCCAUUUGGCAUUAUGUUAUUUUAUCUCUUUACAUUUUCACUCGGCCAAAUGAAUUCAAUUAACCAAAAAA- .......(((.....)))..((((....(-((((....---))))).((((((((...((((..............)))).........))))))))...........))))....- ( -21.54) >DroSec_CAF1 107252 113 - 1 UGAUAAAUGGUUUCACCAGCUUGGCUUUU-CUGCUUUU---GCAGUCCAUUUGGCAUUAUGUUAUUUUAUCUCUUUACAUUUUCACUCGGCCAAAUGAAUUCAAUUAAGCAAAAAAC .......(((.....)))((((((.....-((((....---))))..((((((((...((((..............)))).........)))))))).......))))))....... ( -22.44) >DroSim_CAF1 110235 110 - 1 UGAUAAAUGGUUUCACCAGCUUGGCUUUU-CUGUUUUU---GCAGUCCAUUUGGCAUUAUGUUAUUUUAUCUCUUUACAUUUUCACUCGGCCAAAUGAAUUCAAUUAAGCAAAA--- .......(((.....)))((((((.....-((((....---))))..((((((((...((((..............)))).........)))))))).......))))))....--- ( -20.34) >DroEre_CAF1 112496 111 - 1 UGAUAAAUGGUUUCACCAGCUUGGCUUUU-CUGCUUUU---GCAGUCCAUUUGGCUUUAUGUUAUUUUAUCUCUUUACAUUUUCACUCGGUCAAAUGAAUUCAAUUAAGCAAAAA-- .......(((.....)))((((((.....-((((....---))))..(((((((((..((((..............))))........))))))))).......)))))).....-- ( -20.24) >DroYak_CAF1 123817 113 - 1 UGAUAAAUGGUUUCACCAGCUUGCUUUUUGCUGCUUUUUGCACAGUCCAUUUGGCUUUAUGUUAUUUUAUCUCUUUACAUUUUCACUCGACCAAAUGAAUUCAAUUAAGCACA---- .......(((.....)))(((((....(((.(((.....))))))..(((((((....((((..............))))..((....)))))))))........)))))...---- ( -16.24) >consensus UGAUAAAUGGUUUCACCAGCUUGGCUUUU_CUGCUUUU___GCAGUCCAUUUGGCAUUAUGUUAUUUUAUCUCUUUACAUUUUCACUCGGCCAAAUGAAUUCAAUUAAGCAAAAA__ .......(((.....)))(((((.......((((.......))))..((((((((...((((..............)))).........))))))))........)))))....... (-16.14 = -16.46 + 0.32)
| Location | 10,773,710 – 10,773,823 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 96.34 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -20.48 |
| Energy contribution | -20.96 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.926231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10773710 113 + 23771897 UAAAGAGAUAAAAUAACAUAAUGCCAAAUGGACUGC---AAAAGCAG-CAAAGCCAAGCUGGUGAAACCAUUUAUCAUUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAU ((((..(((.(((((..((((((..((((((.((((---....))))-....(((.....)))....))))))..))))))((((.(....)....))))))))).)))...)))). ( -25.90) >DroSec_CAF1 107292 113 + 1 UAAAGAGAUAAAAUAACAUAAUGCCAAAUGGACUGC---AAAAGCAG-AAAAGCCAAGCUGGUGAAACCAUUUAUCAUUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAU ((((..(((.(((((..((((((..((((((.((((---....))))-....(((.....)))....))))))..))))))((((.(....)....))))))))).)))...)))). ( -26.60) >DroSim_CAF1 110272 113 + 1 UAAAGAGAUAAAAUAACAUAAUGCCAAAUGGACUGC---AAAAACAG-AAAAGCCAAGCUGGUGAAACCAUUUAUCAUUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAU ((((..(((.(((((..((((((..((((((.(((.---.....)))-....(((.....)))....))))))..))))))((((.(....)....))))))))).)))...)))). ( -23.00) >DroEre_CAF1 112534 113 + 1 UAAAGAGAUAAAAUAACAUAAAGCCAAAUGGACUGC---AAAAGCAG-AAAAGCCAAGCUGGUGAAACCAUUUAUCAUUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAU ((((..(((.(((((.......(((((.(((.((((---....))))-....(((((..(((((((....)))))))...))))).....))))))))..))))).)))...)))). ( -26.30) >DroYak_CAF1 123853 117 + 1 UAAAGAGAUAAAAUAACAUAAAGCCAAAUGGACUGUGCAAAAAGCAGCAAAAAGCAAGCUGGUGAAACCAUUUAUCAUUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAU ((((..(((.(((((.......(((((.(((.((.(((....(((.((.....))..)))((((((....)))))).......))).)).))))))))..))))).)))...)))). ( -22.70) >consensus UAAAGAGAUAAAAUAACAUAAUGCCAAAUGGACUGC___AAAAGCAG_AAAAGCCAAGCUGGUGAAACCAUUUAUCAUUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAU ((((..(((.(((((.......(((((.(((.((((.......)))).....(((((..(((((((....)))))))...))))).....))))))))..))))).)))...)))). (-20.48 = -20.96 + 0.48)
| Location | 10,773,783 – 10,773,903 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.89 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -27.78 |
| Energy contribution | -28.12 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10773783 120 + 23771897 UUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAUUGGCAAAACAAAUUGAUUAAUUGAUCUGGCAUUUGCAUGCGGCUCUCGUCUUAAUGAGAACUUGACGUCUCAUUGAGAAC ....((((.(....)....)))).....((((((((......(((((.((.((..(....)..)).))...)))))))))))))....(((((((((((........))))))))))).. ( -29.60) >DroSec_CAF1 107365 120 + 1 UUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAUUGGCAAAACAAAUUGAUUAAUUGAUGUGGCAUUUGCAUGCGGCUCUCGUCUUAAUGAGAACUUGACGUCUCAUUGAGAAC .........((((((((..((((((((((((((.((((.((.....)).))))))))))...))))))))........)))).)))).(((((((((((........))))))))))).. ( -33.30) >DroSim_CAF1 110345 120 + 1 UUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAUUGGCAAAACAAAUUGAUUAAUUGAUCUGGCAUUUGCAUGCGGCUCUCGUCUUAAUGAGAACUUGACGUCUCAUUGAGAAC ....((((.(....)....)))).....((((((((......(((((.((.((..(....)..)).))...)))))))))))))....(((((((((((........))))))))))).. ( -29.60) >DroEre_CAF1 112607 120 + 1 UUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAUUGGCAAAACAAAUUGAUUAAUUGAUCUGGCAUUUGCAUGCGCCUCUCGUCUUAAUGAGAACUUGACGUCUCAUUGAGAAC .....(((..((((((((.((((....(((......))).))))..))).((((....))))))))).((((....))))))).....(((((((((((........))))))))))).. ( -30.50) >DroYak_CAF1 123930 120 + 1 UUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAUUGGCAAAACAAAUUGAUUAAUUGAUCUGGCAUUUGCAUGCGGCUCUCGUCUUAAUGAGAACUUGACGUCUCAUUGAGAAC ....((((.(....)....)))).....((((((((......(((((.((.((..(....)..)).))...)))))))))))))....(((((((((((........))))))))))).. ( -29.60) >DroAna_CAF1 108315 120 + 1 UUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCAUAUUUAUUGGCAAAACAAAUUGAUUAAUUGAUCUGGCAUUUGCAUGGGGCUCUCGUCUUAAUGAGAACUUGACGUCUCAUUGAGAAC .........((((......((((......((((.......))))..........((((....))))))))....((.....)))))).(((((((((((........))))))))))).. ( -28.00) >consensus UUAUUGGCAGAGAUCGUUGGCCAUAUUUAGUCGUAUUUAUUGGCAAAACAAAUUGAUUAAUUGAUCUGGCAUUUGCAUGCGGCUCUCGUCUUAAUGAGAACUUGACGUCUCAUUGAGAAC ....((((.(....)....)))).....((((((((......(((((.((.((..(....)..)).))...)))))))))))))....(((((((((((........))))))))))).. (-27.78 = -28.12 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:56 2006