Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,768,256 – 10,768,363 |
Length | 107 |
Max. P | 0.899775 |
Location | 10,768,256 – 10,768,363 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -19.78 |
Consensus MFE | -18.69 |
Energy contribution | -18.55 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.05 |
Mean z-score | -1.17 |
Structure conservation index | 0.94 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899775 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10768256 107 - 23771897 A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC-------- .-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50) >DroSec_CAF1 101931 107 - 1 A-----CUGUGGCAUAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCUUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC-------- .-----((((((((.........))))).)))..((((....(((((......)))))((((.....))))......................))))...............-------- ( -21.20) >DroSim_CAF1 104827 107 - 1 A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC-------- .-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50) >DroEre_CAF1 106845 107 - 1 A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC-------- .-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50) >DroYak_CAF1 118101 107 - 1 A-----CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC-------- .-----.((((((..........(((.....)))((((...(((........)))...((((.....))))......................))))...)))).)).....-------- ( -19.50) >DroAna_CAF1 102718 120 - 1 AGACUCUUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAACCAGCAACAACCACAACAA ......((((((...........(((.....)))((((...(((........)))...((((.....))))......................))))..............))))))... ( -19.50) >consensus A_____CUGUGGCACAGAUAAUUUGCCAUCAGCAGCGCCAAAUGUAAUCCGCCAUAUAACCGUCUAACGGUAACUCAAAGCCAACAUAAAUAUGCGCAAAGCCAGCAACAAC________ ......((((((((.........))))).)))..((((....((((........))))((((.....))))......................))))....................... (-18.69 = -18.55 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:42 2006