Locus 370

Sequence ID 3L_DroMel_CAF1
Location 1,072,136 – 1,072,235
Length 99
Max. P 0.987032
window544

overview

Window 4

Location 1,072,136 – 1,072,235
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 98.32
Mean single sequence MFE -21.53
Consensus MFE -20.16
Energy contribution -20.35
Covariance contribution 0.19
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.94
SVM decision value 2.06
SVM RNA-class probability 0.987032
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1072136 99 - 23771897
CGCCUCUGCGCUGUUUGUUGCCUAAUUUGCCAAUUAAGUUAAUAGGCAUUUAUUAUUUAGCAAUAAAAUAUGCAAAGCAAUUGUUCAAAAUGUGGCACA
.(((..((((...((((((((.((((.((((.((((...)))).))))...))))....))))))))...))))..(((.((.....)).))))))... ( -22.40)
>DroSec_CAF1 46552 99 - 1
CGCCUCUGCGCUGUUUGUUGCCUAAUUUGCCAAUUAAGUUAAUAGGCAUUUAUUAUUUAGCAAUAAAAUAUGCAAAGCAAUUGUUCAAAAUGUGGCACA
.(((..((((...((((((((.((((.((((.((((...)))).))))...))))....))))))))...))))..(((.((.....)).))))))... ( -22.40)
>DroSim_CAF1 48301 99 - 1
CGCCUCUGCGCUGUUUGUUGCCUAAUUUGCCAAUUAAGUUAAUAGGCAUUUAUUAUUUAGCAAUAAAAUAUGCAAAGCAAUUGUUCAAAAUGUGGCACA
.(((..((((...((((((((.((((.((((.((((...)))).))))...))))....))))))))...))))..(((.((.....)).))))))... ( -22.40)
>DroEre_CAF1 50765 99 - 1
CGCCUCUGCGCUGUUUGUUGCCUAAUUUGCCAAUUAAGUUAAUAGGCAUUUAUUAUUUAGCAAUAAAAUAUGCAAAGCAAUUGUUCAAAAUGUGGCACA
.(((..((((...((((((((.((((.((((.((((...)))).))))...))))....))))))))...))))..(((.((.....)).))))))... ( -22.40)
>DroYak_CAF1 48648 99 - 1
CGCCUCUGCGCUGUUUGUUGCCUAAUUUGCCAAUUAAGUUAAUAGGCAUUUAUUAUUUAGCAAUAAAAUAUGCAAAGCAAUUGUUCAAAAUGUGGCACA
.(((..((((...((((((((.((((.((((.((((...)))).))))...))))....))))))))...))))..(((.((.....)).))))))... ( -22.40)
>DroAna_CAF1 46101 99 - 1
CGCCUCCGUGUUGUUUGUUGCCUAAUUUGCCAAUUAACUUAAUAGGCAUUUAUUAUUUAGCAAUAAAAUAUGCAAAGCAAUUGUUCAAAAUGUGCCACA
.((...((((((..((((((..((((.((((.((((...)))).))))...))))..))))))...))))))....))..................... ( -17.20)
>consensus
CGCCUCUGCGCUGUUUGUUGCCUAAUUUGCCAAUUAAGUUAAUAGGCAUUUAUUAUUUAGCAAUAAAAUAUGCAAAGCAAUUGUUCAAAAUGUGGCACA
.(((..((((...((((((((.((((.((((.((((...)))).))))...))))....))))))))...))))..(((.((.....)).))))))... (-20.16 = -20.35 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:15 2006