Locus 3697

Sequence ID 3L_DroMel_CAF1
Location 10,764,218 – 10,764,321
Length 103
Max. P 0.708375
window5773

overview

Window 3

Location 10,764,218 – 10,764,321
Length 103
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 86.66
Mean single sequence MFE -32.28
Consensus MFE -25.12
Energy contribution -24.88
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.78
SVM decision value 0.37
SVM RNA-class probability 0.708375
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10764218 103 + 23771897
GGAGGGCAGGCAGCAUCACCAUUCGCGAAACAUCUGAAACAGUCUGCCAGACCGAAUGUCUGUCUCACUGUGGUUCACUGUACUCCGC--CCUCU-CACC-GCUCCA
(((((((..((((....(((.((((.((....))))))(((((..(.(((((.....))))).)..))))))))...)))).....))--)))))-....-...... ( -31.00)
>DroSec_CAF1 97956 93 + 1
GGAGGGCAGGCAGCAUCACCAUUCGCGAAACAUCUGAAACAGUCUGCCAGACCGAAUGUCUGUCUUUCUGUGGUUCACUGUACUCCGC--CCUCU------------
(((((((..((((....(((.((((.((....))))))((((...(.(((((.....))))).)...)))))))...)))).....))--)))))------------ ( -29.30)
>DroSim_CAF1 100803 103 + 1
GGAGGGCAGGCAGCAUCACCAUUCGCGAAACAUCUGAAACAGUCUGCCAGACCGAAUGUCUGUCUUUCUGUGGUUCACUGUACUCCGC--CCUCU-UACC-UCUCCA
(((((((..((((....(((.((((.((....))))))((((...(.(((((.....))))).)...)))))))...)))).....))--)))))-....-...... ( -29.40)
>DroEre_CAF1 102867 105 + 1
GGAGGGCAGGCAGCAUCGCCAUUCGCGAAGCAUCUGAAACGGUCUGCCAGACCGAAUGUCUGUCUUUCUGUGGUUCACUGUACUCCAG--CAUCCCCACCACCAUCG
((((((((((((((.((((.....)))).))........(((((.....)))))..)))))))))))).(((((....(((......)--)).....)))))..... ( -38.70)
>DroYak_CAF1 113931 101 + 1
GGAGGGCAGGCAGCGUCAUCAUUCGCGAAACAUCUGAAACGGUCUGCCAGACCGAAUGUCUGUCUGUCUGUGGUUCACUGUACUCCACAACGUCC------CCUUCC
((((((((((((((((.....((((.((....)))))).(((((.....))))).))).)))))))..(((((...........))))).....)------))))). ( -33.00)
>consensus
GGAGGGCAGGCAGCAUCACCAUUCGCGAAACAUCUGAAACAGUCUGCCAGACCGAAUGUCUGUCUUUCUGUGGUUCACUGUACUCCGC__CCUCU__ACC_CCUCCA
((((..(((..(((.......((((.((....))))))((((...(.(((((.....))))).)...)))).)))..)))..))))..................... (-25.12 = -24.88 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:32 2006