| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,761,798 – 10,761,902 |
| Length | 104 |
| Max. P | 0.753925 |
| Location | 10,761,798 – 10,761,902 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 90.52 |
| Mean single sequence MFE | -35.48 |
| Consensus MFE | -26.41 |
| Energy contribution | -26.48 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.753925 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10761798 104 + 23771897 GCCGCUU----------U-----UUUUGUUUUUUACACAAAAGCAAGCGGUGGCGUUCAUUCGUUUGGUCGGUUCAUUGAACUCGCCGGCGUCUUGGACUCUGACUGACUUAUUGAAUG (((((((----------(-----((((((.......))))))).)))))))((.(((((..((((.(((.(((((...))))).)))))))...))))).))................. ( -31.10) >DroSec_CAF1 95510 113 + 1 GCCGCUUAGAGUUUUUGU-----UUUUGUUUUUUACACAAAAGCAAGCGGUGGCGUUCAUUCGU-UGGUCGGUUCAUUGAACUCGCCGGCGUCUUGGACUCUGACUGACUUAUUGAAUG ((((((....((..((((-----((((((.......))))))))))))))))))(((((..(((-((((.(((((...))))).)))))))...))))).................... ( -36.10) >DroSim_CAF1 98330 113 + 1 GCCGCUUAGAGUUUUUGU-----UUUUGUUUUUUACACAAAAGCAAGCGGUGGCGUUCAUUCGU-UGGCCGGUUCAUUGAACUCGCCGGCGUCUUGGACUCUGACUGACUUAUUGAAUG ((((((....((..((((-----((((((.......))))))))))))))))))(((((..(((-((((.(((((...))))).)))))))...))))).................... ( -37.60) >DroYak_CAF1 111382 118 + 1 GCCGCUUUGGGUUUUUAUUUUGUUGUUGUGUUUUACACAAAAGCAAGCGGUGGCGUUCAGUCGU-UGGUCGGUUCAUUGAACUCGCCGGCGUCUUGGACUCUGACUGACUUAUUGAAUG ((((((............((((((.(((((.....))))).)))))).))))))..((((((((-((((.(((((...))))).))))))(((...)))...))))))........... ( -37.12) >consensus GCCGCUUAGAGUUUUUGU_____UUUUGUUUUUUACACAAAAGCAAGCGGUGGCGUUCAUUCGU_UGGUCGGUUCAUUGAACUCGCCGGCGUCUUGGACUCUGACUGACUUAUUGAAUG ((((((....................(((((((.....)))))))))))))((.(((((..(((.((((.(((((...))))).)))))))...))))).))................. (-26.41 = -26.48 + 0.06)
| Location | 10,761,798 – 10,761,902 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 90.52 |
| Mean single sequence MFE | -25.63 |
| Consensus MFE | -20.65 |
| Energy contribution | -21.14 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10761798 104 - 23771897 CAUUCAAUAAGUCAGUCAGAGUCCAAGACGCCGGCGAGUUCAAUGAACCGACCAAACGAAUGAACGCCACCGCUUGCUUUUGUGUAAAAAACAAAA-----A----------AAGCGGC (((((.........(((.........)))...((((.((((...)))))).))....))))).......((((((..((((((.......))))))-----.----------)))))). ( -26.60) >DroSec_CAF1 95510 113 - 1 CAUUCAAUAAGUCAGUCAGAGUCCAAGACGCCGGCGAGUUCAAUGAACCGACCA-ACGAAUGAACGCCACCGCUUGCUUUUGUGUAAAAAACAAAA-----ACAAAAACUCUAAGCGGC (((((.........(((.........)))...((((.((((...)))))).)).-..))))).......(((((((.((((((.............-----))))))....))))))). ( -24.12) >DroSim_CAF1 98330 113 - 1 CAUUCAAUAAGUCAGUCAGAGUCCAAGACGCCGGCGAGUUCAAUGAACCGGCCA-ACGAAUGAACGCCACCGCUUGCUUUUGUGUAAAAAACAAAA-----ACAAAAACUCUAAGCGGC (((((.........(((.........)))(((((.............)))))..-..))))).......(((((((.((((((.............-----))))))....))))))). ( -25.34) >DroYak_CAF1 111382 118 - 1 CAUUCAAUAAGUCAGUCAGAGUCCAAGACGCCGGCGAGUUCAAUGAACCGACCA-ACGACUGAACGCCACCGCUUGCUUUUGUGUAAAACACAACAACAAAAUAAAAACCCAAAGCGGC ...........((((((...(((...)))...((((.((((...)))))).)).-..))))))......((((((....(((((.....)))))..................)))))). ( -26.45) >consensus CAUUCAAUAAGUCAGUCAGAGUCCAAGACGCCGGCGAGUUCAAUGAACCGACCA_ACGAAUGAACGCCACCGCUUGCUUUUGUGUAAAAAACAAAA_____ACAAAAACUCUAAGCGGC (((((.........(((.........)))...((((.((((...)))))).))....))))).......((((((..((((((.......))))))................)))))). (-20.65 = -21.14 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:31 2006