Locus 3695

Sequence ID 3L_DroMel_CAF1
Location 10,760,999 – 10,761,119
Length 120
Max. P 0.643480
window5770

overview

Window 0

Location 10,760,999 – 10,761,119
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.86
Mean single sequence MFE -22.46
Consensus MFE -21.24
Energy contribution -21.64
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.11
Structure conservation index 0.95
SVM decision value 0.23
SVM RNA-class probability 0.643480
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10760999 120 + 23771897
CGUCUCAAUGCUGUUUCAUUGGGCUGAAAUCGCAGCUAGGCGGUAAAUAGCAAAGAAAUAUGAAAAAAAAAAAAUAAAAUACUUAACAAUGAGGCAAACAAAGGCAAGGUCUAUAAGGUG
.((((......(((((((((((((((......)))))..((........))...................................)))))))))).....))))............... ( -23.00)
>DroSec_CAF1 94723 110 + 1
CGUCUCAAUGCUGUUUCAUUGGGCUGAAAUCGCAGCUAGGCGGUAAAUAGCAAAGAAAUAUGAAAA----------AAAUACUUAACAAUGAGGCAAACAAAGGCAAGGUCUAUAAGGUG
.((((......(((((((((((((((......)))))..((........))...............----------..........)))))))))).....))))............... ( -23.00)
>DroSim_CAF1 97543 109 + 1
CGUCUCAAUGCUGUUUCAUUGGGCUGAAAUCGCAGCUAGGCGGUAAAUAGCAAAGAAAUAUGAAA-----------AAAUACUUAACAAUGAGGCAAACAAAGGCAAGGUCUAUAAGGUG
.((((((.(((((((((....(((((......))))).....).))))))))......(((....-----------..)))........))))))......((((...))))........ ( -23.40)
>DroEre_CAF1 99461 115 + 1
CGUCUCAAUGCUGUUUCAUUGGGCUAAAAUCGCAGCUAGGCGGCAAAUAGCAAAGAAAUAUGAAAAAAAAU--A---AAUACUUAACAAUGAGGCAAACAAAGGCAAGGUCUAUUAGGUG
.((((......((((((((((.((((...((((......))))....)))).......(((........))--)---.........)))))))))).....))))............... ( -21.60)
>DroYak_CAF1 110523 118 + 1
CGUCUCAAUGCUGUUUCAUUGGGCUAAAAUCGCAGCUAGGCGGCAAAUAGCAAAGAAAUAUGAAAAAAAAU--ACGAAAUACUUAACAAUGAGGCAAACAAAGGCAAGGUCUAUAAGGUG
.((((......((((((((((.((((...((((......))))....)))).......(((........))--)............)))))))))).....))))............... ( -21.30)
>consensus
CGUCUCAAUGCUGUUUCAUUGGGCUGAAAUCGCAGCUAGGCGGUAAAUAGCAAAGAAAUAUGAAAAAAAA___A__AAAUACUUAACAAUGAGGCAAACAAAGGCAAGGUCUAUAAGGUG
.((((......(((((((((((((((......)))))..((........))...................................)))))))))).....))))............... (-21.24 = -21.64 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:29 2006