Locus 3691

Sequence ID 3L_DroMel_CAF1
Location 10,758,238 – 10,758,379
Length 141
Max. P 0.872466
window5760 window5761

overview

Window 0

Location 10,758,238 – 10,758,339
Length 101
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 83.32
Mean single sequence MFE -30.32
Consensus MFE -24.00
Energy contribution -25.44
Covariance contribution 1.44
Combinations/Pair 1.03
Mean z-score -1.95
Structure conservation index 0.79
SVM decision value 0.88
SVM RNA-class probability 0.872466
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10758238 101 - 23771897
AUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACU------------GACUGCACUGAGUUGCAUAAUUUAAUAAGCGAGGUUGGAUUCAAUAGCUUCUAUUAACCUAC
......((((((((((((((.....((.....)).....------------).)))))).))))))).....(((((((((...((((....)))).)))..))))))..... ( -23.80)
>DroSec_CAF1 91983 89 - 1
AUUUUCGCAAUUUGUGCAGCUU--------------------UG----GGGGGCUGCACUGAGUUGCAUAAAUUAAUAAGCGAGGUUGGAUUCAAUAGCUUCUAUUAACUGAC
......((((((((((((((((--------------------..----..))))))))).))))))).....(((((((((...((((....)))).)))..))))))..... ( -28.50)
>DroSim_CAF1 94773 112 - 1
AUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUGGUUGAAU-GGGGGCUGCACUGAGUUGCAUAAAUUAAUAAGCGAGGUUGGAUUCAAUAGCUUCUAUUAACUGAC
.((((.(((((((((((((((.((......((((.....))))....-)).)))))))).))))))).))))(((((((((...((((....)))).)))..))))))..... ( -35.60)
>DroEre_CAF1 96677 113 - 1
AUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUGCUUGAAUGGGGGCCUGCACUGAGUUGCAUAAAUUAAUAAGCGAGGUUCGAUUCAAUAGCUUCUAUUAGAUGAU
.((((.(((((((((((((((.((.(((.((......)).)))....)).)).)))))).))))))).))))((((((...((((((.........))))))))))))..... ( -28.00)
>DroYak_CAF1 107658 113 - 1
AUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUGCUUGAAUGGGGGGCUGCACUGAGUUGCAUAAAUUAAUAAGCGAGGUUCGAUUCAAUAGCUUCUAUUAAGAGGC
.((((((((((((((((((((.((((((.((......)).)))....))).)))))))).))))))).((......)).))))).............((((((....)))))) ( -35.70)
>consensus
AUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUG_UUGAAU_GGGGGCUGCACUGAGUUGCAUAAAUUAAUAAGCGAGGUUGGAUUCAAUAGCUUCUAUUAACUGAC
......(((((((((((((((.((........................)).)))))))).))))))).....((((((...(((((((.......)))))))))))))..... (-24.00 = -25.44 +   1.44)

alignment

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secondary structure

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dotplot

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Window 1

Location 10,758,271 – 10,758,379
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.32
Mean single sequence MFE -28.07
Consensus MFE -21.00
Energy contribution -22.40
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.75
SVM decision value 0.73
SVM RNA-class probability 0.835312
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10758271 108 - 23771897
UUGCGCAAUUUUAAUAAAUAUUUACAUUUGUUUCAAACCAAUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACU------------GACUGCACUGAGUUGCAUAAUUUAAUAAG
((((((((....(((((((......)))))))..........)))))))).((((((((((...((...((.((.....------------)))).))...))))))))))......... ( -23.74)
>DroSec_CAF1 92016 96 - 1
UUGCGCAAUUUUAAUAAAUAUUUACAUUUGUUUCAAACCAAUUUUCGCAAUUUGUGCAGCUU--------------------UG----GGGGGCUGCACUGAGUUGCAUAAAUUAAUAAG
............(((((((......))))))).......(((((..((((((((((((((((--------------------..----..))))))))).)))))))..)))))...... ( -23.90)
>DroSim_CAF1 94806 119 - 1
UUGCGCAAUUUUAAUAAAUAUUUACAUUUGUUUCAAACCAAUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUGGUUGAAU-GGGGGCUGCACUGAGUUGCAUAAAUUAAUAAG
....((((....(((((((......)))))))..........))))(((((((((((((((.((......((((.....))))....-)).)))))))).)))))))............. ( -32.84)
>DroEre_CAF1 96710 120 - 1
UUGCGCAAUUUUAAUAAAUAUUUACAUUUGUUUCAAACCAAUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUGCUUGAAUGGGGGCCUGCACUGAGUUGCAUAAAUUAAUAAG
....((((....(((((((......)))))))..........))))(((((((((((((((.((.(((.((......)).)))....)).)).)))))).)))))))............. ( -27.64)
>DroYak_CAF1 107691 120 - 1
UUGCGCAAUUUUAAUAAAUAUUUACAUUUGUUUCAAACCAAUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUGCUUGAAUGGGGGGCUGCACUGAGUUGCAUAAAUUAAUAAG
....((((....(((((((......)))))))..........))))(((((((((((((((.((((((.((......)).)))....))).)))))))).)))))))............. ( -32.24)
>consensus
UUGCGCAAUUUUAAUAAAUAUUUACAUUUGUUUCAAACCAAUUUGCGCAAUUUGUGCAGCUGCCUGAGAAGAUCUAACUG_UUGAAU_GGGGGCUGCACUGAGUUGCAUAAAUUAAUAAG
....((((....(((((((......)))))))..........))))(((((((((((((((.((........................)).)))))))).)))))))............. (-21.00 = -22.40 +   1.40)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:20 2006