| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,757,265 – 10,757,367 |
| Length | 102 |
| Max. P | 0.637744 |
| Location | 10,757,265 – 10,757,367 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 77.85 |
| Mean single sequence MFE | -25.34 |
| Consensus MFE | -19.46 |
| Energy contribution | -19.58 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.637744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10757265 102 - 23771897 CCAUAAAUUUGUAUAUACAACCUAUUUUUU-UUCUCAGUGUACUGUGUAAAUAGUAGGAUGAGGAACAUGCACUUACAUAUGUUCCAGACGAACUCAG------AGUUC .......(((((.....((.((((((.(((-..(.(((....))).).))).)))))).)).((((((((........))))))))..))))).....------..... ( -21.90) >DroSec_CAF1 90990 109 - 1 CCAUAAAGUUGUAUUUACCACCUACUUUUUGUUCUCAGUGUACUGUGUAAAUAGUGGGAUGAGGAACAUGCACUUACAUAUGUUCCAGACGAACUCAGAGGGCGAGUUC .......(((........((((((((.((((..(.(((....))).))))).)))))).)).((((((((........)))))))).)))((((((.......)))))) ( -28.00) >DroSim_CAF1 93538 109 - 1 CCAUAAAUUUGUAUUUACCACCUACUUUUUGUUCUCAGUGUACUGCGUAAAUAGUGGGAUGAGGAACAUGCACUUACAUAUGUUCCAGACGAACUCAGAGGGCGAGUUC ..................((((((((.((((..(.(((....))).))))).)))))).)).((((((((........))))))))....((((((.......)))))) ( -26.40) >DroEre_CAF1 95635 89 - 1 GCA-------------------UGU-GUUUCUGCUCAGUGUACUGUGUAAGCGGUGGAAUGAGGAACAUGCACUUACACAUGUUCCAGACGAACUCAGAGGGCGAGUUC ...-------------------...-...((((((((.(.((((((....)))))).).))))(((((((........))))))))))).((((((.......)))))) ( -27.10) >DroYak_CAF1 106554 89 - 1 UUA-------------------UAU-AUUUGUUCUCAGUGUAUUGUGUAAAAUGUGGAAUGAGGAACAGGCACUUACAUAUGUUCCAGACGAACUCAGAGGGCGAGUGC ...-------------------..(-((((((((((.(((((..((((....(((..........))).)))).)))))..((((.....))))...))))))))))). ( -23.30) >consensus CCAUAAA_UUGUAU_UAC_ACCUAUUUUUUGUUCUCAGUGUACUGUGUAAAUAGUGGGAUGAGGAACAUGCACUUACAUAUGUUCCAGACGAACUCAGAGGGCGAGUUC ..................................(((.(.((((((....)))))).).)))((((((((........))))))))....((((((.......)))))) (-19.46 = -19.58 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:18 2006