Locus 369

Sequence ID 3L_DroMel_CAF1
Location 1,066,078 – 1,066,169
Length 91
Max. P 0.500000
window543

overview

Window 3

Location 1,066,078 – 1,066,169
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -19.57
Consensus MFE -8.69
Energy contribution -10.05
Covariance contribution 1.36
Combinations/Pair 1.05
Mean z-score -2.84
Structure conservation index 0.44
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1066078 91 - 23771897
-GACCAUGUGUUGUAAUUUAUAAAAUGCAUCUAGAUGCAAUUAAGUAAAGCAUUAAAGUAAAUUACAAACA-AAUGCGGAAGAUGCAGAGCGC-
-.....(((.(((((((((((....(((((....))))).((((........)))).))))))))))))))-..((((.....))))......- ( -17.80)
>DroVir_CAF1 66706 91 - 1
GCAGCAUGUGCUGUAAUUUAUAAAAUGCAUCUAAAUGCAAUUAAGUAAAGCAUAAAAGUAAAUUACAAACA-AAUGCGGAAGAUGCUGCAG-C-
(((((((((..((((((((((....(((((....))))).....(.....)......)))))))))).)).-....(....))))))))..-.- ( -25.00)
>DroWil_CAF1 62423 76 - 1
--------UGUUGCAUCUCUCAA------UGUUCAUGCAAUUAAGUAAAACAUAAAAGUAAAUUACAAACAAAAUGCGGAAGAUGCAACA----
--------.(((((((((..(.(------((((..(((......))).)))))....(((...)))...........)..))))))))).---- ( -18.50)
>DroYak_CAF1 42470 92 - 1
-GACCAUGUGUUGUAAUUUAUAAAAUGCAUCUCGAUGCAAUUAAGUAAAGCGUAAAAGUAAAUUACAAACA-AAUGCGGAAGAUGCAGUGCGCC
-.....(((.(((((((((((....(((((....))))).....(.....)......))))))))))))))-..((((.....))))....... ( -17.10)
>DroMoj_CAF1 54888 92 - 1
GCCACAUGUGCUGUAAUUUAUAAAAUGCAUCUAAAUGCAAUUAAGUAAAGCAUAAAAGUAAAUUACAAACA-AAUGCGGACGAUGCUGCUGGC-
((((..(((..((((((((((....(((((....))))).....(.....)......)))))))))).)))-...((((......))))))))- ( -21.50)
>DroAna_CAF1 40402 91 - 1
-GACCAUGUGUUGUAAUUUAUAAAAUGCAUCUAGAUGCAAUUAAGUAAAGCAUAAAAGUAAAUUACAAACA-AAUGCGGAAGAUGCAUCGACC-
-.....(((.(((((((((((....(((((....))))).....(.....)......))))))))))))))-.(((((.....))))).....- ( -17.50)
>consensus
_GACCAUGUGUUGUAAUUUAUAAAAUGCAUCUAGAUGCAAUUAAGUAAAGCAUAAAAGUAAAUUACAAACA_AAUGCGGAAGAUGCAGCGCGC_
...........((((((((((....(((((....))))).....(.....)......))))))))))........(((.....)))........ ( -8.69 = -10.05 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:14 2006