Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,756,314 – 10,756,433 |
Length | 119 |
Max. P | 0.968429 |
Location | 10,756,314 – 10,756,433 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -18.36 |
Energy contribution | -18.42 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.81 |
Structure conservation index | 0.87 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10756314 119 + 23771897 CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUCUUUUGCUCCGGCAAGGGUAUUCCCCAUUUCCCCCUCAUCC .(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-..........((((....))))(((.....)))............... ( -23.30) >DroSec_CAF1 90077 101 + 1 CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUCUUUUGCUC----------------CAUUUC--CCUCAUCC .(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-................----------------......--........ ( -16.30) >DroSim_CAF1 92602 117 + 1 CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUAUUUUGCUCUGGCAAGGGUAUUACCCAUUUC--CCUCAUCC .(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-..........((((....))))(((.....))).....--........ ( -24.20) >DroEre_CAF1 94622 117 + 1 UAAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU-UACUUUUCUUUUGCUCUUGCCAGGGUAUUACCCAUUUC--CCUCGUCC .(((((((....(((((.((((((....(((........)))...)))))).....)))))...)))))))-............((....))..(((.....))).....--........ ( -21.20) >DroYak_CAF1 105530 118 + 1 CAAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUUAUACUUUUCUUUUGCUCGGCCAAGGGUAUUCCCCAUUUC--CCUCAUCC .(((((((....(((((.((((((....(((........)))...)))))).....)))))...))))))).................((...((((............)--)))...)) ( -20.90) >consensus CGAGACCCUUUUUGGAAUUACAGACCAUUGCUAAUUUAUGCGCCUUUUGUAUGAUUUUUCAUUUGGGUUUU_UACUUUUCUUUUGCUCUGGCAAGGGUAUUACCCAUUUC__CCUCAUCC .(((((((....(((((.((((((....(((........)))...)))))).....)))))...))))))).......................(((.....)))............... (-18.36 = -18.42 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:16 2006