Locus 3686

Sequence ID 3L_DroMel_CAF1
Location 10,751,737 – 10,751,852
Length 115
Max. P 0.718541
window5754

overview

Window 4

Location 10,751,737 – 10,751,852
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.16
Mean single sequence MFE -29.05
Consensus MFE -22.28
Energy contribution -22.12
Covariance contribution -0.16
Combinations/Pair 1.32
Mean z-score -1.22
Structure conservation index 0.77
SVM decision value 0.39
SVM RNA-class probability 0.718541
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10751737 115 - 23771897
CAGGAAAGCAGCAGCAAGUGCCAGUCGCACAGUUCUCUGCAUUCUCGUCCAGUUUAA--GGGAUGGGGUGCACUGAACCAAAUCAUCAUA---GUAAUAAGAAACAUUAAUUUUGUAAAG
(((((..((....))..((((.....)))).((((..(((((((.(((((.......--.))))))))))))..))))............---.................)))))..... ( -27.20)
>DroSec_CAF1 85142 115 - 1
CAGGAAAGCAGCAGCAAGUGCCAGUCGCACAGUUCUCUGCAUUCUCGUCCAGUUUAA--GGGAUGGGGUGCACUGAACAAAAUCACCAUA---AUAAUAGAAAACAUUCAUUUUGUAAAG
..((...((....))..((((.....)))).((((..(((((((.(((((.......--.))))))))))))..)))).......))...---...((((((........)))))).... ( -29.60)
>DroSim_CAF1 87851 115 - 1
CAGGAAAGCAGCAGCAAGUGCCAGUCGCACAGUUCUCUGCAUUCUCGUCCAGUUUAA--GGGAUGGGGUGCACUGAACAAAAUCAUCAUA---GUAAUAAAAAACAUUAAUUUUGUAUGG
........((...((((((((.....)))).((((..(((((((.(((((.......--.))))))))))))..))))............---...................)))).)). ( -28.20)
>DroEre_CAF1 90057 109 - 1
CAGGAAAGCAGCAGCAAGUGCCAGUCGCACAGUUCUCUGCAUUCGCGUCCAGUUUAA--GGGAUGGGGUGCACUGAGCAAAAUCAGCAUA---GUAAUAAGAAGUG--G----UUCACAG
..(((..((....((..((((.....)))).((((..(((((((.(((((.......--.))))))))))))..)))).......)).((---....))....)).--.----))).... ( -31.70)
>DroYak_CAF1 100877 107 - 1
CAGGAAAGCAGCAGCAAGUGCCAGUCGCACAGUUCUCUGCAUUCUCGUCCAGCUUAA--GGGAUGGGGUGCACUGCACAAAAUCAC-CUA---GUAA-AAGAAGUG--G----CUUUUAG
...((((((.((((...((((.....)))).......(((((((.(((((.......--.)))))))))))))))).......(((-((.---....-.))..)))--)----))))).. ( -32.00)
>DroAna_CAF1 87446 116 - 1
CAGGAAAACAGCAGCAAGUGCCAGUGGCAGGGCUCUCUGCAUUCUAUGUCAGGAAAACUGGGCAGAAAGGCACUGAGAAAAAUA--CAUACCUUUAUUAAAAAAU--AAAUGCAAUAGAA
.............(((((((((....(((((....))))).((((...((((.....))))..)))).))))))..........--......((((((....)))--))))))....... ( -25.60)
>consensus
CAGGAAAGCAGCAGCAAGUGCCAGUCGCACAGUUCUCUGCAUUCUCGUCCAGUUUAA__GGGAUGGGGUGCACUGAACAAAAUCACCAUA___GUAAUAAAAAACA_UAAUUUUGUAAAG
.......((....))..((((.....)))).((((..(((((((.(((((..........))))))))))))..)))).......................................... (-22.28 = -22.12 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:13 2006