Locus 3682

Sequence ID 3L_DroMel_CAF1
Location 10,747,975 – 10,748,077
Length 102
Max. P 0.512946
window5745

overview

Window 5

Location 10,747,975 – 10,748,077
Length 102
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 81.72
Mean single sequence MFE -20.02
Consensus MFE -12.93
Energy contribution -12.67
Covariance contribution -0.25
Combinations/Pair 1.16
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value -0.04
SVM RNA-class probability 0.512946
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10747975 102 - 23771897
G---------GGCUGAAAUUGUUGCCACGUUUAAGAAUGCGUUGACAAUAU----UUUUUGUUCAACUUAAUUAAAAGGCAAAUAGCACACAACUCACACAC--AAAAACAAAGCAC
.---------.((((......(((((...(((((...((.((((((((...----...))).))))).)).))))).))))).))))...............--............. ( -16.20)
>DroSim_CAF1 84103 100 - 1
G---------GGCUGAAAUUGUUGCCACGUUAAAGAAUGCGUUGACAAUAU----UUUUUGUUCAACUUAAUUAAAAGGCAAAUAGCACACAACUCACA--C--AAAAACAAAGCAC
.---------.((((......(((((..((........))((((((((...----...))).)))))..........))))).))))............--.--............. ( -16.10)
>DroEre_CAF1 86383 100 - 1
G---------AGCUGAAAUUGUUGUCAAGUUAAAGAAUGCGUUGACAAUAU----UUUUUGUUCAACUUAAUUAAAAGGCAAAUAGCACACAGCUCGCA--C--AAAAACAAAGCAC
(---------((((((((.(((((((((((........)).))))))))).----)))....................((.....))...))))))((.--.--.........)).. ( -21.70)
>DroAna_CAF1 83882 114 - 1
GCAGGCUGUUUGGUGGGAUUGUUGCCAACUUAAAGAAUGCGUUGACAUUAUUAUUUUUUUGUUCAACUUAAUUAAAAGGCAAACAUCAACCAUCAAAAA---AAAAAAACAAGCCAC
...((((.((((((((...(((((((..(.....).....(((((((..(......)..)).)))))..........))).))))....))))))))..---.........)))).. ( -26.10)
>consensus
G_________GGCUGAAAUUGUUGCCAAGUUAAAGAAUGCGUUGACAAUAU____UUUUUGUUCAACUUAAUUAAAAGGCAAAUAGCACACAACUCACA__C__AAAAACAAAGCAC
...........((((......(((((..((........))((((((((..........))).)))))..........))))).)))).............................. (-12.93 = -12.67 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:05 2006